FC929631

Overview
NameFC929631
Unique NameFC929631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length286
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:137..421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929631 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.499e-19
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  132 NLFFSTDVEKHVSEADIVFVSINTPTKSHGLGAGKAEYLTYWESAARVIAD 284
            NLFFSTD+E  + EAD++F+S+NTPTK+ G G G+A  L Y ESAAR+IA+
Sbjct:   64 NLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAE 114

HSP 2 Score: 47.3654 bits (111), Expect = 2.499e-19
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 2 
Query:   11 PSIEVAVVDISVSRINAWNSDQLPIYEPELDGVVKQ*R 124
            P I + +VD S  RI  WNSD+LPIYEP LD VVK+ R
Sbjct:   24 PDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKCR 61
The following BLAST results are available for this feature:
BLAST of FC929631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_DROME2.499e-1960.78UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DE06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929631 ID=FC929631; Name=FC929631; organism=Citrus clementina; type=EST; length=286bp
GGCACGAGGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTC
GGATCAATGCCTGGAACAGTGACCAACTCCCCATCTATGAGCCTGAACTT
GATGGTGTGGTAAAGCAATGACGAGGGAAGGAACCTGTTCTTCAGCACCG
ATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTTTCAATCAAT
ACCCCAACCAAAAGTCACGGTCTCGGTGCTGGCAAAGCTGAATATCTGAC
ATACTGGGAGAGTGCTGCTCGTGTGATTGCCGATGT
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