FC929635

Overview
NameFC929635
Unique NameFC929635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length900
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: MET_ATEGE (Hepatocyte growth factor receptor OS=Ateles geoffroyi GN=MET PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.827e-18
Identity = 74/213 (34.74%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1083 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1286          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: MET_AOTNA (Hepatocyte growth factor receptor OS=Aotus nancymaae GN=MET PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.827e-18
Identity = 74/213 (34.74%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1083 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1286          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: YRK_CHICK (Proto-oncogene tyrosine-protein kinase Yrk OS=Gallus gallus GN=YRK PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 68/198 (34.34%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G+G FG V+         VAVK L    T     F  E + + +++H  LV L  Y    EE + +V E+M  GSL  +L++  G    L   +   +A   A G+A++      + IHRD++A+NIL+ +    K+ADFGLARLI   E            +  PE    G+ T + DV+SFG++L ELVT G+ P
Sbjct:  276 LGNGQFGEVWMGTWNGTTKVAVKTLKPG-TMSPEAFLEEAQIMKRLRHDKLVQL--YAVVSEEPIYIVTEFMSQGSLLDFLKDGDG--RYLKLPQLVDMAAQIAAGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALFGKFTIKSDVWSFGILLTELVTKGRVP 465          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: TNI3K_RAT (Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 69/203 (33.99%), Postives = 105/203 (51.72%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHRE----FTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPE-YGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            IIG G FG VYK    + K VA+K+  +A T   +     F  E+  L ++ H  +V  +G C     +  +V +Y+  GSL   L  +     +L    +  IA   A+G+ +LH   T  IIHRD+ + NILL E+  A VADFG +R + + +    T   G   ++ PE + Q  R T + DV+S+ + L EL+TG+ P
Sbjct:  468 IIGSGSFGKVYKGRCRN-KIVAIKRY-RANTYCSKSDVDMFCREVSILCQLNHPCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHEQK---RILDLQSKLIIAVDVAKGMEYLH-SLTQPIIHRDLNSHNILLYEDGHAVVADFGESRFLQSLDEDNMTKQPGNLRWMAPEVFTQCTRYTIKADVFSYSLCLWELLTGEIP 664          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: MET_OTOGA (Hepatocyte growth factor receptor OS=Otolemur garnettii GN=MET PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 74/213 (34.74%), Postives = 110/213 (51.64%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDENFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: IRAK2_MOUSE (Interleukin-1 receptor-associated kinase-like 2 OS=Mus musculus GN=Irak2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 63/219 (28.77%), Postives = 112/219 (51.14%), Query Frame = 3
Query:   33 ILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQG----HREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLD--LWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVA-------DFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTG 650
            +++AT +F +++ I +G F  +Y+    +G   A KKL +          R   AEM+   +  H N++PLLG+C+  +   L+Y YM NGSL   LW +   G+ ++L W +R  I  G    +  LH   +  IIH ++K++N+LL++    K+A               +   TH+      +  Y+P  + + G+ T + D++S G++L E++TG
Sbjct:  201 VVQATEDFDQSHRISEGTFADIYQGQR-NGVAFAFKKLREVAGSSPGSMDRFLQAEMQLCLRCCHANVLPLLGFCTGRQFHSLIYPYMANGSLHDRLWAQ---GNSDMLPWPQRASICSGLLLAVEHLH---SLDIIHSNVKSANVLLDQHLNPKLAHPVAHPHPDNKKTKYTVMRTHL---FQASAAYLPEHFIRVGQLTKQVDIFSCGIVLAEVLTG 409          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: GDT4_DICDI (Probable serine/threonine-protein kinase gdt4 OS=Dictyostelium discoideum GN=gdt4 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 65/201 (32.34%), Postives = 102/201 (50.75%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILL-----NEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            + +G FG VY +A+    +VAVK      ++   E   E   L K+KH N+V  +G  +F     +V +Y   GSL+ + RN+   L ++   +  +I+   +R  +FLH      IIHRD+K  N+L+     +    AK++DFG  R I+    H     AGT  Y+ PE  +    T   DVYSF ++  EL++G+ P
Sbjct: 1355 LSEGSFGVVY-SAIWRSSSVAVKLFKHHYSKD--EIDKETSILSKIKHPNIVSFIGSLNFLNTYGIVIDYHPRGSLNYYTRNQNIKLSMV---QNIRISLDISRACSFLHKN---GIIHRDLKPDNVLIVSFDPDSSICAKISDFGTCREING--KHELNSKAGTTRYMSPEILEGLPYTYSTDVYSFAILFFELLSGRVP 1544          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: EPHB1_RAT (Ephrin type-B receptor 1 OS=Rattus norvegicus GN=Ephb1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 67/208 (32.21%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIP-----PEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG VYK  L   GK    VA+K L    ++  R +F +E   +G+  H N++ L G  +     +++ E+M NG+LD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP     PE     + T+  DV+S+G+++ E+++ G+ P
Sbjct:  624 VIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQD-DTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: EPHB1_MOUSE (Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 67/208 (32.21%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIP-----PEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG VYK  L   GK    VA+K L    ++  R +F +E   +G+  H N++ L G  +     +++ E+M NG+LD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP     PE     + T+  DV+S+G+++ E+++ G+ P
Sbjct:  624 VIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQD-DTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC929635 vs. ExPASy Swiss-Prot
Match: EPHA3_MOUSE (Ephrin type-A receptor 3 OS=Mus musculus GN=Epha3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 70/217 (32.26%), Postives = 112/217 (51.61%), Query Frame = 3
Query:   36 LEATNNFCKTNIIGDGGFGTVY--KAALPDGK--TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHH-GFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAG--TFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            L+ATN      ++G G FG V   +  LP  K  +VA+K L    T+  R +F  E   +G+  H N++ L G  +  + +++V EYM NGSLD +LR       V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R++        T   G     +  PE     + T+  DV+S+G++L E+++ G+ P
Sbjct:  616 LDATN-ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPEMIVTEYMENGSLDSFLRKHDAQFTVI---QLVGMLRGIASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAMSYRKFTSASDVWSYGIVLWEVMSYGERP 824          
The following BLAST results are available for this feature:
BLAST of FC929635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_ATEGE2.827e-1834.74Hepatocyte growth factor receptor OS=Ateles geoffr... [more]
MET_AOTNA2.827e-1834.74Hepatocyte growth factor receptor OS=Aotus nancyma... [more]
YRK_CHICK3.692e-1834.34Proto-oncogene tyrosine-protein kinase Yrk OS=Gall... [more]
TNI3K_RAT3.692e-1833.99Serine/threonine-protein kinase TNNI3K OS=Rattus n... [more]
MET_OTOGA3.692e-1834.74Hepatocyte growth factor receptor OS=Otolemur garn... [more]
IRAK2_MOUSE3.692e-1828.77Interleukin-1 receptor-associated kinase-like 2 OS... [more]
GDT4_DICDI3.692e-1832.34Probable serine/threonine-protein kinase gdt4 OS=D... [more]
EPHB1_RAT3.692e-1832.21Ephrin type-B receptor 1 OS=Rattus norvegicus GN=E... [more]
EPHB1_MOUSE3.692e-1832.21Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 ... [more]
EPHA3_MOUSE3.692e-1832.26Ephrin type-A receptor 3 OS=Mus musculus GN=Epha3 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DE11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929635 ID=FC929635; Name=FC929635; organism=Citrus clementina; type=EST; length=900bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAGAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CGGTTGGGTGTTTCAGAAGATGAAGAAGGGACAGGCTGCTGATGTTCTAG
ATCCTACAGTCCTTACTGCAGATTCAAAGCCCATGATGCTTAAAATGCTC
CGGATTGCTGGTGATTGCCTCTCTGATACCCCTGCTATGAGGCCTACCAT
GCTGCATGTGTTGAAGTTTCTGAAAGAGATCAAAGTTGAGTAAGTTTCTT
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