FC929653

Overview
NameFC929653
Unique NameFC929653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A3_OREMO (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Oreochromis mossambicus GN=atp1a3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 38/110 (34.55%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +       + +  + L  + +L ++L  D   A++LA E     +M R P
Sbjct:  714 KADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLFFIIVNIPLALGTITILCIDLGTDMGSAISLAYETAESDIMKRQP 823
[Close]
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A_ARTSF (Sodium/potassium-transporting ATPase subunit alpha-A OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATE-PPTDHLMHRSPV 567
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ NI+K I + LT  +  L    +  +    + +  V +L ++L  D + A+++A E P  D    R PV
Sbjct:  702 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNIKKSIAYTLTSKIPELSPFLMYILFDLPLAIGTVTILCIDLGTDVVPAISMAYEGPEADPRKPRDPV 813
The following BLAST results are available for this feature:
BLAST of FC929653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A3_OREMO5.700e-1234.55Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A_ARTSF8.230e-1135.71Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929653 ID=FC929653; Name=FC929653; organism=Citrus clementina; type=EST; length=809bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTAT
TGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGAT
ATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGTC
TGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATATT
ATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGG
TCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACTG
TCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGT
GATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGA
TACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGA
TGCATAGGTCCCCAGTTGGTCGAATAGAACCTCTTATAACTAATATAATG
TGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGT
CCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGATG
CCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCTT
TGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTCGAGCT
TCTGTTTGT
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