FC929653

Overview
NameFC929653
Unique NameFC929653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATC2_YEAST (Calcium-transporting ATPase 2 OS=Saccharomyces cerevisiae GN=PMC1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.732e-37
Identity = 80/177 (45.20%), Postives = 118/177 (66.67%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVP--LNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVLNFQGKRIL--NLESDSDAHSNTV*NTQIFNSFVLCQ 756
            AD+G +MGI  TEVA+ +S+II++ D+F+++V  ++WGR V  +I+KFIQFQL VN+ ++++ FV++V+S D    L AVQLLW+NLIMDTL ALALAT+ P  ++M R P GR   LI+   W+ +L QA+ Q+ V  +L+F G  +     E +  +H     N   FN+FV  Q
Sbjct:  852 ADVGFSMGISGTEVAREASDIILMTDDFSAIVNAIKWGRCVSVSIKKFIQFQLIVNITAVILTFVSSVASSDETSVLTAVQLLWINLIMDTLAALALATDKPDPNIMDRKPRGRSTSLISVSTWKMILSQATLQLIVTFILHFYGPELFFKKHEDEITSHQQQQLNAMTFNTFVWLQ 1028          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATCL_BACSU (Calcium-transporting ATPase OS=Bacillus subtilis GN=yloB PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.015e-21
Identity = 52/143 (36.36%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLIT-NIMWRNLLIQASYQVSVLLVLNF 660
            QADIG++MGI  T+VAK +S+++++DDNFA++   ++ GR++Y NI+KFI++ L  NV  +++   A + +  +PL  +Q+LWVNL+ D L A+AL  + P   +M R P    E +    + W+  ++   + + V  +L F
Sbjct:  643 QADIGVSMGITGTDVAKEASSLVLVDDNFATIKSAIKEGRNIYENIRKFIRYLLASNVGEILVMLFAMLLALPLPLVPIQILWVNLVTDGLPAMALGMDQPEGDVMKRKPRHPKEGVFARKLGWK--VVSRGFLIGVATILAF 783          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATC1_SCHPO (Calcium-transporting ATPase 1 OS=Schizosaccharomyces pombe GN=pmr1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.143e-21
Identity = 52/139 (37.41%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            ADIG+ MG Q T+VAK ++++I+ DD+FA+++  V  G+ ++ NI+ FI FQL+ +VA+L +  +++V     PLNA+Q+LW+N++MD   A +L  E   + +M + P  R  P+I+  + + +L+ A   V+V +V+
Sbjct:  638 ADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVLLSAFIIVTVTIVV 776          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATCL_SYNE7 (Probable calcium-transporting ATPase OS=Synechococcus elongatus (strain PCC 7942) GN=pacL PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLV-INFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLL---IQASYQVSVLLVLNFQ 663
            QA+IG+ MGI  T+V+K +S++++LDDNFA++V  V  GR VY NI+KFI++ L  N+  L+ I     +  G VPL  +Q+LW+NL+ D + ALALA EP    +M R P    E +    +   +L   +  S    VL+V+ +Q
Sbjct:  671 QANIGVAMGITGTDVSKEASDMVLLDDNFATIVAAVEEGRIVYGNIRKFIKYILGSNIGELLTIASAPLLGLGAVPLTPLQILWMNLVTDGIPALALAVEPGDPTIMQRRPHNPQESIFARGLGTYMLRVGVVFSAFTIVLMVIAYQ 817          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.161e-19
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY----QVSVLLVLNFQGKRILNLESDSDAHS 708
            ADIG+ MGI  TEVAK +S++++ DDNF+++V  V  GRS+Y N++ FI++ ++ NV  ++  F+ AV      L  VQLLWVNL+ D   A AL   P    +M + P    + LI + ++   ++  SY     V + +V   Q    L +   SD H+
Sbjct:  739 ADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAVLGIPECLIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKNTDALINSWVFFRYMVIGSYVGIATVGIFIVWYTQAS-FLGINIVSDGHT 898          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.161e-19
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVN---VASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITN-IMWRNLLIQASYQVSV--LLVLNFQGKRILNLESDSDAHS 708
            ADIG+ MGI  TEVAK +S++++ DDNF+++V  V  GRS+Y N++ FI++ ++ N   VAS+ +     +  G +P   VQLLWVNL+ D   A AL   PP   +M + P    + LIT  I++R ++I     V+   + ++ +     + ++   D HS
Sbjct:  742 ADIGVAMGISGTEVAKEASDLVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIP---VQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTHNSFMGIDLSQDGHS 901          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.822e-19
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVN---VASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITN-IMWRNLLIQASYQVSV--LLVLNFQGKRILNLESDSDAHS 708
            ADIG+ MGI  TEVAK +S++++ DDNF+++V  V  GRS+Y N++ FI++ ++ N   VAS+ +     +  G +P   VQLLWVNL+ D   A AL   PP   +M + P    + LIT  I++R ++I     V+   + ++ +     + ++   D HS
Sbjct:  742 ADIGVAMGISGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIP---VQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTHSSFMGIDLSQDGHS 901          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATC_PLAFK (Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.686e-19
Identity = 50/131 (38.17%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            ADIG+ MGI  TEVAK +S+I++ DDNF ++V+ ++ GR +Y N++ FI++ ++ N+  +   F+ A+      L  VQLLWVNL+ D L A AL   PP   +M   P  + + LI  +     +I  +Y
Sbjct:  925 ADIGIAMGINGTEVAKEASDIVLADDNFNTIVEAIKEGRCIYNNMKAFIRYLISSNIGEVASIFITALLGIPDSLAPVQLLWVNLVTDGLPATALGFNPPEHDVMKCKPRHKNDNLINGLTLLRYIIIGTY 1055          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATC1_YEAST (Calcium-transporting ATPase 1 OS=Saccharomyces cerevisiae GN=PMR1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 45/130 (34.62%), Postives = 85/130 (65.38%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQAS 627
            +DIG++MG   T+VAK +S++++ DD+F++++  +  G+ ++ NIQ F+ FQL+ +VA+L +  ++       PLNA+Q+LW+N++MD   A +L  EP    +M + P  R + ++T+ + + LL  A+
Sbjct:  691 SDIGVSMGRIGTDVAKEASDMVLTDDDFSTILTAIEEGKGIFNNIQNFLTFQLSTSVAALSLVALSTAFKLPNPLNAMQILWINILMDGPPAQSLGVEPVDHEVMKKPPRKRTDKILTHDVMKRLLTTAA 820          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATC1_YARLI (Calcium-transporting ATPase 1 OS=Yarrowia lipolytica GN=PMR1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 46/118 (38.98%), Postives = 79/118 (66.95%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLIT 591
            ADIG+ MG   T+VAK ++++I+ DD+FA+++  +  G+ ++ NI+ FI FQL+ ++A+L I  VA +   + PLN +Q+LW+N++MD   A +L  EP    +M++ P  R E ++T
Sbjct:  671 ADIGIAMGQGGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIRNFITFQLSTSMAALSIVAVATIMGLENPLNPMQILWINILMDGPPAQSLGVEPVDPDVMNKPPRPRNEKVMT 788          
The following BLAST results are available for this feature:
BLAST of FC929653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ATC2_YEAST8.732e-3745.20Calcium-transporting ATPase 2 OS=Saccharomyces cer... [more]
ATCL_BACSU3.015e-2136.36Calcium-transporting ATPase OS=Bacillus subtilis G... [more]
ATC1_SCHPO5.143e-2137.41Calcium-transporting ATPase 1 OS=Schizosaccharomyc... [more]
ATCL_SYNE71.954e-2040.14Probable calcium-transporting ATPase OS=Synechococ... [more]
ECAP_SOLLC2.161e-1936.02Calcium-transporting ATPase, endoplasmic reticulum... [more]
ECA4_ARATH2.161e-1935.58Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ECA1_ARATH2.822e-1935.58Calcium-transporting ATPase 1, endoplasmic reticul... [more]
ATC_PLAFK3.686e-1938.17Calcium-transporting ATPase OS=Plasmodium falcipar... [more]
ATC1_YEAST8.211e-1934.62Calcium-transporting ATPase 1 OS=Saccharomyces cer... [more]
ATC1_YARLI8.211e-1938.98Calcium-transporting ATPase 1 OS=Yarrowia lipolyti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929653 ID=FC929653; Name=FC929653; organism=Citrus clementina; type=EST; length=809bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTAT
TGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGAT
ATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGTC
TGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATATT
ATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGG
TCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACTG
TCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGT
GATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGA
TACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGA
TGCATAGGTCCCCAGTTGGTCGAATAGAACCTCTTATAACTAATATAATG
TGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGT
CCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGATG
CCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCTT
TGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTCGAGCT
TCTGTTTGT
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