FC929653

Overview
NameFC929653
Unique NameFC929653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATC_TRYBB (Probable calcium-transporting ATPase OS=Trypanosoma brucei brucei GN=TBA1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.829e-18
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +ADIG+ MG   TEVAK +S +++ DDNFA+VVK V+ GR++Y N ++FI++ ++ N+  +V   V  +      L+ VQLLWVNL+ D L A AL    P   +M + P    EP++   ++   ++   Y
Sbjct:  712 KADIGIAMG-SGTEVAKSASKMVLADDNFATVVKAVQEGRAIYNNTKQFIRYLISSNIGEVVCILVTGLFGLPEALSPVQLLWVNLVTDGLPATALGFNAPDRDIMEQRPRRMEEPIVNGWLFMRYMVIGVY 842          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C2_MOUSE (Calcium-transporting ATPase type 2C member 2 OS=Mus musculus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.389e-18
Identity = 45/130 (34.62%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQAS 627
            ADIG+ MG   T+V+K ++N+I++DD+F++++  V  G+ ++ NI+ F++FQL+ ++A+L +  ++ V +   PLNA+Q+LWVN+IMD   A +L  EP     + R P    + ++   +   +L+ A+
Sbjct:  683 ADIGIAMGQTGTDVSKEAANMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPSPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALRRPPRSVGDTILNRALILRVLMSAA 812          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C2_HUMAN (Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens GN=ATP2C2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 51/170 (30.00%), Postives = 97/170 (57.06%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVLNFQGKRILNLESDSDAHSNTV*NTQIFNSFV 747
            ADIG+ MG   T+V+K ++N+I++DD+F++++  V  G+ ++ NI+ F++FQL+ ++++L +  ++ V +   PLNA+Q+LW+N+IMD   A +L  EP       + P    + +++  +   +L+ A+  +S  L + ++       E   D  S     T  F  FV
Sbjct:  685 ADIGIAMGQTGTDVSKEAANMILVDDDFSAIMNAVEEGKGIFYNIKNFVRFQLSTSISALSLITLSTVFNLPSPLNAMQILWINIIMDGPPAQSLGVEPVDKDAFRQPPRSVRDTILSRALILKILMSAAIIISGTLFIFWK-------EMPEDRASTPRTTTMTFTCFV 847          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C1_MOUSE (Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.075e-18
Identity = 42/129 (32.56%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQA 624
            ADIG+ MG   T+V K ++++I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++A+L +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++ + P    + ++T  +   +L+ +
Sbjct:  654 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGSPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 782          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C1_RAT (Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 42/129 (32.56%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQA 624
            ADIG+ MG   T+V K ++++I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++A+L +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++ + P    + ++T  +   +L+ +
Sbjct:  655 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 783          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C1_PONAB (Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 42/129 (32.56%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQA 624
            ADIG+ MG   T+V K ++++I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++A+L +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++ + P    + ++T  +   +L+ +
Sbjct:  654 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 782          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C1_HUMAN (Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 42/129 (32.56%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQA 624
            ADIG+ MG   T+V K ++++I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++A+L +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++ + P    + ++T  +   +L+ +
Sbjct:  655 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 783          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C1_BOVIN (Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 42/129 (32.56%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQA 624
            ADIG+ MG   T+V K ++++I++DD+F +++  +  G+ +Y NI+ F++FQL+ ++A+L +  +A + +   PLNA+Q+LW+N+IMD   A +L  EP    ++ + P    + ++T  +   +L+ +
Sbjct:  689 ADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSS 817          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ECA2_ARATH (Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSV----LLVLNFQGKRILNLESDSDAHS 708
            ADIG+ MGI  TEVAK +S++++ DDNF+++V  V  GRS+Y N++ FI++ ++ NV  ++  F+ A       +  VQLLWVNL+ D   A AL   P    +M + P    + LI + +    L+  SY V V    + VL +     L +   SD H+
Sbjct:  738 ADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADIDIMKKPPRKSDDCLIDSWVLIRYLVIGSY-VGVATVGIFVLWYTQASFLGISLISDGHT 897          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A2_RABIT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Oryctolagus cuniculus GN=ATP2A2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M++ P    EPLI+  ++   L    Y
Sbjct:  712 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPRNPKEPLISGWLFFRYLAIGCY 842          
The following BLAST results are available for this feature:
BLAST of FC929653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ATC_TRYBB1.829e-1837.88Probable calcium-transporting ATPase OS=Trypanosom... [more]
AT2C2_MOUSE2.389e-1834.62Calcium-transporting ATPase type 2C member 2 OS=Mu... [more]
AT2C2_HUMAN3.120e-1830.00Calcium-transporting ATPase type 2C member 2 OS=Ho... [more]
AT2C1_MOUSE4.075e-1832.56Calcium-transporting ATPase type 2C member 1 OS=Mu... [more]
AT2C1_RAT5.322e-1832.56Calcium-transporting ATPase type 2C member 1 OS=Ra... [more]
AT2C1_PONAB5.322e-1832.56Calcium-transporting ATPase type 2C member 1 OS=Po... [more]
AT2C1_HUMAN5.322e-1832.56Calcium-transporting ATPase type 2C member 1 OS=Ho... [more]
AT2C1_BOVIN5.322e-1832.56Calcium-transporting ATPase type 2C member 1 OS=Bo... [more]
ECA2_ARATH6.951e-1836.02Calcium-transporting ATPase 2, endoplasmic reticul... [more]
AT2A2_RABIT6.951e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929653 ID=FC929653; Name=FC929653; organism=Citrus clementina; type=EST; length=809bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTAT
TGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGAT
ATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGTC
TGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATATT
ATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGG
TCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACTG
TCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGT
GATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGA
TACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGA
TGCATAGGTCCCCAGTTGGTCGAATAGAACCTCTTATAACTAATATAATG
TGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGT
CCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGATG
CCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCTT
TGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTCGAGCT
TCTGTTTGT
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