FC929653

Overview
NameFC929653
Unique NameFC929653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A2_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Homo sapiens GN=ATP2A2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M++ P    EPLI+  ++   L    Y
Sbjct:  712 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPRNPKEPLISGWLFFRYLAIGCY 842          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A2_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Gallus gallus GN=ATP2A2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M++ P    EPLI+  ++   L    Y
Sbjct:  712 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGFPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMNKPPRNPKEPLISGWLFFRYLAIGCY 842          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2C2_RAT (Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 44/130 (33.85%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  238 ADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQAS 627
            ADIG+ MG   T+V+K ++++I++DD+F++++  V  G+ ++ NI+ F++FQL+ ++A+L +  ++ V +   PLNA+Q+LWVN+IMD   A +L  EP     + R P    + ++   +   +L+ A+
Sbjct:  683 ADIGIAMGQTGTDVSKEAADMILVDDDFSAIMSAVEEGKGIFYNIKNFVRFQLSTSIAALSLITLSTVCNLPNPLNAMQILWVNIIMDGPPAQSLGVEPVDRDALKRPPRSVKDTILNRALILKILMSAA 812          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_RAT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Rattus norvegicus GN=Atp2a1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M R P    EPLI+  ++   +    Y
Sbjct:  713 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_RANES (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Rana esculenta GN=ATP2A1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M R P    EPLI+  ++   +    Y
Sbjct:  713 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_RABIT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Oryctolagus cuniculus GN=ATP2A1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M R P    EPLI+  ++   +    Y
Sbjct:  713 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_MOUSE (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Mus musculus GN=Atp2a1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M R P    EPLI+  ++   +    Y
Sbjct:  713 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Homo sapiens GN=ATP2A1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M R P    EPLI+  ++   +    Y
Sbjct:  713 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_MAKNI (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+S+V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M + P    EPLI+  ++   +    Y
Sbjct:  710 KAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMGKPPRSPKEPLISGWLFFRYMAIGGY 840          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT2A1_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Gallus gallus GN=ATP2A1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASY 630
            +A+IG+ MG   T VAK +S +++ DDNF+++V  V  GR++Y N+++FI++ ++ NV  +V  F+ A       L  VQLLWVNL+ D L A AL   PP   +M + P    EPLI+  ++   L    Y
Sbjct:  713 KAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRSPKEPLISGWLFFRYLAIGGY 843          
The following BLAST results are available for this feature:
BLAST of FC929653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT2A2_HUMAN6.951e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A2_CHICK6.951e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2C2_RAT9.078e-1833.85Calcium-transporting ATPase type 2C member 2 OS=Ra... [more]
AT2A1_RAT9.078e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_RANES9.078e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_RABIT9.078e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_MOUSE9.078e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_HUMAN9.078e-1838.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_MAKNI1.186e-1738.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_CHICK1.186e-1738.64Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929653 ID=FC929653; Name=FC929653; organism=Citrus clementina; type=EST; length=809bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTAT
TGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGAT
ATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGTC
TGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATATT
ATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGG
TCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACTG
TCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGT
GATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGA
TACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGA
TGCATAGGTCCCCAGTTGGTCGAATAGAACCTCTTATAACTAATATAATG
TGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGT
CCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGATG
CCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCTT
TGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTCGAGCT
TCTGTTTGT
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