FC929653

Overview
NameFC929653
Unique NameFC929653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A4_RAT (Sodium/potassium-transporting ATPase subunit alpha-4 OS=Rattus norvegicus GN=Atp1a4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 48/140 (34.29%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  V S  +PL  + +L ++L  D + A++LA E P   +M R P     P   N++   L+  A  Q+ ++  L
Sbjct:  732 KADIGIAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIVLSIPLPLGTITILCIDLGTDMVPAISLAYETPESDIMKRLP---RNPKTDNLVNDRLIGMAYGQIGMIQAL 868          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT12A_RAT (Potassium-transporting ATPase alpha chain 2 OS=Rattus norvegicus GN=Atp12a PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 40/110 (36.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    +  V+   +P+  + +L+++L  D + ++ALA E     +M+R P
Sbjct:  739 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIVAGLPLPIGTITILFIDLGTDIIPSIALAYEKAESDIMNRKP 848          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT12A_MOUSE (Potassium-transporting ATPase alpha chain 2 OS=Mus musculus GN=Atp12a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 40/110 (36.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    +  V+   +P+  + +L+++L  D + ++ALA E     +M+R P
Sbjct:  738 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIVAGLPLPIGTITILFIDLGTDIIPSIALAYEKAESDIMNRKP 847          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_XENLA (Potassium-transporting ATPase alpha chain 1 OS=Xenopus laevis GN=atp4a PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 43/137 (31.39%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVL 645
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +   +S  +PL  + +L++ L  D   +++LA E     +MH  P     P    ++   L + + +Q+ ++
Sbjct:  734 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELAPYLIYITASVPLPLGCITILFIELCTDIFPSVSLAYERAESDIMHLKP---RNPRRDRLVNEALAVYSYFQIGII 867          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT12A_HUMAN (Potassium-transporting ATPase alpha chain 2 OS=Homo sapiens GN=ATP12A PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 39/110 (35.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    +  +    +P+  + +L+++L  D + ++ALA E     +M+R P
Sbjct:  742 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYSLTKNIAELCPFLIYIIVGLPLPIGTITILFIDLGTDIIPSIALAYEKAESDIMNRKP 851          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT12A_CAVPO (Potassium-transporting ATPase alpha chain 2 OS=Cavia porcellus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14
Identity = 40/110 (36.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    V  +    +P+  + +L+++L  D + ++ALA E     +M+R P
Sbjct:  736 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLVYIIVGLPLPIGTITILFIDLGTDIIPSIALAYEKVESDIMNRKP 845          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT12A_RABIT (Potassium-transporting ATPase alpha chain 2 OS=Oryctolagus cuniculus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 40/110 (36.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNF+S+V  V  GR ++ N++K I + LT N+A L    +  +    +P+  + LL+++L  D + ++ALA E     +M+R P
Sbjct:  797 KADIGVAMGITGSDAAKNAADMILLDDNFSSIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIILGLPLPIGTITLLFIDLGTDIIPSIALAYEKAESDIMNRKP 906          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A_TORCA (Sodium/potassium-transporting ATPase subunit alpha OS=Torpedo californica PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 46/140 (32.86%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    V  +++  +PL  V +L ++L  D + A++LA E     +M R P     P    ++   L+  A  Q+ ++  L
Sbjct:  726 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIANVPLPLGTVTILCIDLGTDMVPAISLAYERAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 862          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A1_XENLA (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Xenopus laevis GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 45/140 (32.14%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M R P     P    ++   L+  A  Q+ ++  L
Sbjct:  729 KADIGIAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 865          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT12A_BUFMA (Potassium-transporting ATPase alpha chain 2 OS=Bufo marinus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 44/137 (32.12%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVL 645
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ NI+K I + LT NVA L    +  ++   +P+  + +L+++L  D + +++ A E     +M+R P  +    + N   + L + A  Q+ ++
Sbjct:  745 KADIGIAMGIAGSDAAKNAADMILLDDNFASIVTGVEEGRLIFDNIKKSIGYTLTKNVAELCPFLIYIIADIPLPIGTITILFIDLGTDIIPSVSFAYEKAERDIMNRKPRRKNVDRLVN---QQLALYAYLQIGII 878          
The following BLAST results are available for this feature:
BLAST of FC929653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A4_RAT5.508e-1534.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT12A_RAT5.508e-1536.36Potassium-transporting ATPase alpha chain 2 OS=Rat... [more]
AT12A_MOUSE5.508e-1536.36Potassium-transporting ATPase alpha chain 2 OS=Mus... [more]
ATP4A_XENLA1.227e-1431.39Potassium-transporting ATPase alpha chain 1 OS=Xen... [more]
AT12A_HUMAN1.227e-1435.45Potassium-transporting ATPase alpha chain 2 OS=Hom... [more]
AT12A_CAVPO1.602e-1436.36Potassium-transporting ATPase alpha chain 2 OS=Cav... [more]
AT12A_RABIT2.093e-1436.36Potassium-transporting ATPase alpha chain 2 OS=Ory... [more]
AT1A_TORCA2.733e-1432.86Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_XENLA2.733e-1432.14Sodium/potassium-transporting ATPase subunit alpha... [more]
AT12A_BUFMA2.733e-1432.12Potassium-transporting ATPase alpha chain 2 OS=Buf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929653 ID=FC929653; Name=FC929653; organism=Citrus clementina; type=EST; length=809bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTAT
TGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGAT
ATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGTC
TGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATATT
ATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGG
TCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACTG
TCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGT
GATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGA
TACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGA
TGCATAGGTCCCCAGTTGGTCGAATAGAACCTCTTATAACTAATATAATG
TGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGT
CCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGATG
CCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCTT
TGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTCGAGCT
TCTGTTTGT
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