FC929653

Overview
NameFC929653
Unique NameFC929653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_RAT (Potassium-transporting ATPase alpha chain 1 OS=Rattus norvegicus GN=Atp4a PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P
Sbjct:  736 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 845          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_RABIT (Potassium-transporting ATPase alpha chain 1 OS=Oryctolagus cuniculus GN=ATP4A PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P
Sbjct:  738 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 847          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_PIG (Potassium-transporting ATPase alpha chain 1 OS=Sus scrofa GN=ATP4A PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P
Sbjct:  737 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 846          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_MOUSE (Potassium-transporting ATPase alpha chain 1 OS=Mus musculus GN=Atp4a PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P
Sbjct:  736 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 845          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_HUMAN (Potassium-transporting ATPase alpha chain 1 OS=Homo sapiens GN=ATP4A PE=2 SV=5)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P
Sbjct:  738 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 847          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: ATP4A_CANFA (Potassium-transporting ATPase alpha chain 1 OS=Canis familiaris GN=ATP4A PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 40/110 (36.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P
Sbjct:  737 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 846          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A2_PONAB (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Pongo abelii GN=ATP1A2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 41/110 (37.27%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 564
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR V+ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M R P
Sbjct:  724 KADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLVFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQP 833          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A1_SHEEP (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 45/140 (32.14%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M R P     P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPQTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A1_RABIT (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oryctolagus cuniculus GN=ATP1A1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 45/140 (32.14%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M R P     P    ++   L+  A  Q+ ++  L
Sbjct:  727 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of FC929653 vs. ExPASy Swiss-Prot
Match: AT1A1_PIG (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 45/140 (32.14%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  235 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRIEPLITNIMWRNLLIQASYQVSVLLVL 654
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M R P     P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 861          
The following BLAST results are available for this feature:
BLAST of FC929653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ATP4A_RAT3.570e-1436.36Potassium-transporting ATPase alpha chain 1 OS=Rat... [more]
ATP4A_RABIT3.570e-1436.36Potassium-transporting ATPase alpha chain 1 OS=Ory... [more]
ATP4A_PIG3.570e-1436.36Potassium-transporting ATPase alpha chain 1 OS=Sus... [more]
ATP4A_MOUSE3.570e-1436.36Potassium-transporting ATPase alpha chain 1 OS=Mus... [more]
ATP4A_HUMAN3.570e-1436.36Potassium-transporting ATPase alpha chain 1 OS=Hom... [more]
ATP4A_CANFA3.570e-1436.36Potassium-transporting ATPase alpha chain 1 OS=Can... [more]
AT1A2_PONAB3.570e-1437.27Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_SHEEP3.570e-1432.14Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_RABIT3.570e-1432.14Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_PIG3.570e-1432.14Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929653 ID=FC929653; Name=FC929653; organism=Citrus clementina; type=EST; length=809bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTAT
TGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGAT
ATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGTC
TGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATATT
ATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGG
TCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACTG
TCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGT
GATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGA
TACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGA
TGCATAGGTCCCCAGTTGGTCGAATAGAACCTCTTATAACTAATATAATG
TGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGT
CCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGATG
CCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCTT
TGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTCGAGCT
TCTGTTTGT
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