FC929660

Overview
NameFC929660
Unique NameFC929660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929660 vs. ExPASy Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 52/172 (30.23%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  178 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDK-IFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYG--VVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLN 675
            L  Y  QL   PL T+A+T  +L  + D+ AQ+L    G+           VL+G A  GP        L K +        T+  +V  +Q   +P       I+ G   V+EG    DVK K++K+Y     T+W  WP V  +N   VPL  RV+F +++++ W  +L+
Sbjct:    2 LSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFGPAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAP---TFIGIFLGSMAVLEGT---DVKEKLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167          
BLAST of FC929660 vs. ExPASy Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.565e-12
Identity = 51/188 (27.13%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  187 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-------GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPKAK*LENINMHVS 729
            YL  L  HPL TK+++ G L    DI+AQ+L                        G  Y GP  H+ +  LD + KG+   S + KK++++QL  +P     FM     +      ++++   K+ +  V+  +W  WP    IN   VP   RV++ S++++ WG+FL+  +  K   + N N  ++
Sbjct:    8 YLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVKGE-GRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNLENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLSHISFDKDHHIRNQNKEIN 193          
BLAST of FC929660 vs. ExPASy Swiss-Prot
Match: MPV17_BOVIN (Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.565e-12
Identity = 45/169 (26.63%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  187 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 684
            Y   L  HP + + +TAG L  + D+++Q+L    G+              GC ++GP     + +LD++  G      + KK++L+Q   +P     F+   G +  G   +D   K+++D+P    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct:    7 YQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGPVVGGWYRVLDRLIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVGTL-NGLSAQDNWAKLQRDFPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKA 173          
The following BLAST results are available for this feature:
BLAST of FC929660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SYM1_NEUCR1.600e-1230.23Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 S... [more]
PX24B_DICDI3.565e-1227.13PXMP2/4 family protein 2 OS=Dictyostelium discoide... [more]
MPV17_BOVIN3.565e-1226.63Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DG02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929660 ID=FC929660; Name=FC929660; organism=Citrus clementina; type=EST; length=845bp
TTGCAAGCTGCACAAAGTACAAGTTAAAGCAAGTCCCTTACCCTTATTAT
TATTATTATTATTATAATTATTATTCTCCCCATTTCCATTTCCTTCTCCA
TCTTTAAAATTGCAAGAAGAAGAACAGAAGGAAGAAGAAATTTTAGTGAG
GAAATGGGATCAATTGCAAAGAAAGGTTTGCAACAGTACTTGATACAACT
TCAGCAACACCCTTTGAGAACAAAGGCAATAACTGCGGGAGTGTTGTCAG
CAATCAGCGACATAGTTGCTCAGAAACTCACTGGCATTCAGAAACTTCAG
CTGAGGAGGCTACTTCTTAAAGTGCTTTTTGGATGTGCTTATCTTGGACC
GTTCAGACATTTCCTGCATTTAATCCTGGATAAAATTTTCAAGGGGAAAA
AAGATACCAGTACAGTTGCCAAGAAGGTGGTGTTGGAACAGTTGACATCT
TCTCCTTGGAACAACTTGATGTTTATGATTTACTATGGGGTTGTTGTTGA
AGGAAGACCTTGGAGGGATGTGAAAACTAAAATCAAGAAGGACTACCCGA
CAGTGCAGTATACATCATGGACGTTCTGGCCAGTTGTGGGGTGGATAAAT
CATCTATATGTACCACTGCAGTTCCGTGTGATTTTCCACAGCTTAGTTGC
AATGTGTTGGGGGATATTTCTGAATCTTCGGGCTTTGCCTAAAGCTAAGT
GACTTGAAAATATAAATATGCACGTCAGTGTAGTAATGCTTGTTACTCTA
TGCACATTTTTTATGTAGCTCAAAGTATATTTCGGGCAGCCAAGAATACT
AATGTGATTATTTCTCTATTTTTCTGAATATTTGATGGATAAGTG
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