FC929684

Overview
NameFC929684
Unique NameFC929684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  412 LYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGG-MHIVLELSPNGSLASLLYGM-KEKLKWGIRYKIALGVAEGLLYLHEG 786
            L  ++ ATN+F     IG GG+ +VYKG L +G  VA+KR     + + +A+F +E+ +++   H +   L+GY  E   M +V E   NG+L S LYG     L W  R +I +G A GL YLH G
Sbjct:  472 LVAVKEATNSFDENRAIGVGGFGKVYKGELHDGTKVAVKR-ANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGSARGLHYLHTG 597          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  301 PLKLSIRRSSSMREGIDMPRNLFVNSYNSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTAD-EIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLASLLY---GMKEKLKWGIRYKIALGVAEGLLYLHEGC 789
            P + S++R++S              S+   +  K F++  LQ  TN+FS ENLIG G    VY+  L  G+L A+++L + + + E    FL  +  +  + H N  +L+G+  E    +++ E   NG+L  LL+    +K +L W +R +IAL  A+ L YLHE C
Sbjct:  444 PAEASLKRTTS-------------KSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIALEAAKALEYLHEIC 598          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: IRAK4_BOVIN (Interleukin-1 receptor-associated kinase 4 OS=Bos taurus GN=IRAK4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFE------NLIGKGGYAEVYKGRLRNGQLVAIKRLTRG---TADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGG-MHIVLELSPNGSLASLLYGMK--EKLKWGIRYKIALGVAEGLLYLHE 783
            FS +EL+  TNNF         N +G+GG+  VYKG + N + VA+K+L      + +E+   F  E+ +MA   H N  +LLG+  +G  + +V    PNGSL   L  +     L W +R KIA G A GL YLHE
Sbjct:  169 FSFFELKDVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-RTVAVKKLAAMVDISTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWNMRCKIAQGAANGLSYLHE 305          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  388 QSPQ-KIFSLYELQSATNNFSFENLIGKGGYAEVYKG----------RLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLY---GMKEKLKWGIRYKIALGVAEGLLYLH 780
            QSP  K F+  EL++AT NF  ++++G+GG+  V+KG          +   G ++A+K+L +    +   ++L+E+  +    HPN  KL+GY +E     +V E  P GSL + L+      + L W +R K+ALG A+GL +LH
Sbjct:   50 QSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQ-DGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLH 194          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 52/134 (38.81%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIAD-FLSELGIMAHVDHPNTAKLLGYGIEGGMHI-VLELSPNGSLASLLYGMKEK---LKWGIRYKIALGVAEGLLYLHEG 786
            +IFS  E++SAT NF  + +IG+G +  VY+G+L +G+ VA+K   R    ++ AD F++E+ +++ + H N     G+  E    I V E    GSLA  LYG + K   L W  R K+A+  A+GL YLH G
Sbjct:  594 RIFSHKEIKSATRNF--KEVIGRGSFGAVYRGKLPDGKQVAVK--VRFDRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNG 723          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGI-----EGGMHIVLELSPNGSLASLLY----GMKEKLKWGIRYKIALGVAEGLLYLHEG 786
            F + EL+ ATNNFS +N IG+GG+  VYKG L +G ++A+K++   +  +  A+F +E+ I++++ H N   L G  +     E   ++V +   NG+L   L+      K  L W  R  I L VA+GL YLH G
Sbjct:  283 FKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIE-SEFQGDAEFRNEVEIISNLKHRNLVPLRGCSMVDDDSESQRYLVYDYMSNGNLDDHLFPRGETTKMPLSWPQRKSIILDVAKGLAYLHYG 417          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRL---TRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEG-GMHIVLELSPNGSLASLLYG--MKEKLKWGIRYKIALGVAEGLLYLHEGC 789
            F    L+ ATNNF+    +G GGY EV+KG L +G+ +AIKRL    +   DEI     +E+ +++   H N  +LLG         IV E   N SL  +L+    K++L W  R  I LG AEGL YLHE C
Sbjct:  319 FEYSTLKKATNNFNESCKLGVGGYGEVFKGTLSDGREIAIKRLHVSGKKPRDEI----HNEIDVISRCQHKNLVRLLGCCFTNMNSFIVYEFLANTSLDHILFNPEKKKELDWKKRRTIILGTAEGLEYLHETC 448          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: CRK2_ARATH (Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLYGMK--EKLKWGIRYKIALGVAEGLLYLHE 783
            F    L+ AT +F   N +G+GG+  VYKG L +G+ +A+KRL          DF +E+ +++ V+H N  +LLG    G    +V E   N SL   ++ +   + L W  RY I +G AEGL+YLHE
Sbjct:  313 FKYSTLEKATGSFDNANKLGQGGFGTVYKGVLPDGRDIAVKRLFFNNRHR-ATDFYNEVNMISTVEHKNLVRLLGCSCSGPESLLVYEYLQNKSLDRFIFDVNRGKTLDWQRRYTIIVGTAEGLVYLHE 440          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  400 KIFSLYELQSATNNFSFENLIGKGGYAEVYKG----------RLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLY---GMKEKLKWGIRYKIALGVAEGLLYLH 780
            K FSL EL+SAT NF  ++++G+GG+  V+KG          +   G ++A+KRL +    +   ++L+E+  +  +DHPN  KL+GY +E     +V E    GSL + L+      + L W  R ++ALG A GL +LH
Sbjct:   54 KNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQ-EGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLH 193          
BLAST of FC929684 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFE------NLIGKGGYAEVYKGRLRNGQLVAIKRLTRG---TADEIIADFLSELGIMAHVDHPNTAKLLGYGIEG-GMHIVLELSPNGSLASLLYGM--KEKLKWGIRYKIALGVAEGLLYLHE 783
            FS YEL++ TNNF         N +G+GG+  VYKG + N   VA+K+L      T +E+   F  E+ +MA   H N  +LLG+  +G  + +V    PNGSL   L  +     L W +R KIA G A G+ +LHE
Sbjct:  168 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE 304          
The following BLAST results are available for this feature:
BLAST of FC929684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
Y5597_ARATH1.179e-1438.58Probable receptor-like protein kinase At5g59700 OS... [more]
SRF1_ARATH1.179e-1432.14Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
IRAK4_BOVIN1.179e-1438.41Interleukin-1 receptor-associated kinase 4 OS=Bos ... [more]
APK1B_ARATH1.179e-1434.25Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y5487_ARATH1.540e-1438.81Probable LRR receptor-like serine/threonine-protei... [more]
Y1105_ARATH1.540e-1436.76Probable receptor-like protein kinase At1g11050 OS... [more]
CRK43_ARATH1.540e-1440.30Putative cysteine-rich receptor-like protein kinas... [more]
CRK2_ARATH1.540e-1437.21Cysteine-rich receptor-like protein kinase 2 OS=Ar... [more]
NAK_ARATH2.011e-1435.46Probable serine/threonine-protein kinase NAK OS=Ar... [more]
IRAK4_HUMAN2.011e-1438.41Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BA07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929684 ID=FC929684; Name=FC929684; organism=Citrus clementina; type=EST; length=789bp
ATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAATAAACACA
ATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAAT
ATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCTT
GAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAATAACC
ATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTAT
TCTACGACTTATTCAGAAACAAATCGAAGAAATCATTACTCACATTGTAT
CCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTGA
TATGCCGAGGAATCTTTTTGTAAATTCCTACAATTCACAGTCTCCCCAGA
AGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTTC
GAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTTT
GAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCAG
ATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGTC
GATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCAT
GCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTTT
ATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTTA
GGGGTAGCCGAAGGCTTACTTTATCTTCATGAGGGCTGT
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