FC929692 | Citrus Genome Database

Overview


Name	FC929692
Unique Name	FC929692
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	789

Libraries


Library Name	Type
PhII-IIIV1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC929692_ssr137	microsatellite	FC929692_ssr137:137..148.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267	contig	Ccv1_Contig9267:2..789.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 57.7658 bits (138), Expect = 4.521e-15
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 44.669 bits (104), Expect = 4.521e-15
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = -2

Query:  654 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPV 785
            N+LADG N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  127 NDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 57.7658 bits (138), Expect = 4.521e-15
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 44.669 bits (104), Expect = 4.521e-15
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = -2

Query:  654 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPV 785
            N+LADG N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  127 NDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 7.635e-15
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG++VI +  K   D WIFWVGPFIG  +A   + +IL
Sbjct:  189 TGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALAVLIYDFIL 233

HSP 2 Score: 42.743 bits (99), Expect = 7.635e-15
Identity = 21/35 (60.00%), Postives = 23/35 (65.71%), Query Frame = -2

Query:  681 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKR 785
            NELA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  129 NELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 1.675e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  190 TGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234

HSP 2 Score: 40.4318 bits (93), Expect = 1.675e-14
Identity = 20/35 (57.14%), Postives = 22/35 (62.86%), Query Frame = -2

Query:  681 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKR 785
            N LA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  129 NALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 1.675e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  189 TGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233

HSP 2 Score: 40.4318 bits (93), Expect = 1.675e-14
Identity = 20/35 (57.14%), Postives = 22/35 (62.86%), Query Frame = -2

Query:  681 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKR 785
            N LA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  129 NALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 57.3806 bits (137), Expect = 4.774e-14
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AV+    + + + WIFWVGPFIG+ +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALAVLIYDFIL 231

HSP 2 Score: 41.5874 bits (96), Expect = 4.774e-14
Identity = 21/44 (47.73%), Postives = 25/44 (56.82%), Query Frame = -2

Query:  654 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPV 785
            N+LA G N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  127 NDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 56.9954 bits (136), Expect = 4.774e-14
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AV+    + + + WIFWVGPFIG  +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 41.9726 bits (97), Expect = 4.774e-14
Identity = 21/44 (47.73%), Postives = 25/44 (56.82%), Query Frame = -2

Query:  654 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPV 785
            N+LA G N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  127 NDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 6.202e-14
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AVI +    + D W+FWVGPFIG  +A   + +IL
Sbjct:  189 TGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233

HSP 2 Score: 39.2762 bits (90), Expect = 6.202e-14
Identity = 20/44 (45.45%), Postives = 24/44 (54.55%), Query Frame = -2

Query:  654 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPV 785
            N LA G + G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  129 NSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 172

[Close]

BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.157e-11
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG G+NPARSFG+AV+    K +   WIFWVGP IG   AA  + +IL
Sbjct:  191 TGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235

HSP 2 Score: 36.965 bits (84), Expect = 1.157e-11
Identity = 23/67 (34.33%), Postives = 32/67 (47.76%), Query Frame = -2

Query:  597 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVL----APLPHWVCCVHGSLGHHP 785
            N L+ G + G GLG EI+ TF LV  V + TD +R      VP+       L H +   +   G +P
Sbjct:  131 NGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNP 197

The following BLAST results are available for this feature:

BLAST of FC929692 vs. ExPASy Swiss-Prot

BLAST of FC929692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49


Match Name	E-value	Identity	Description
AQP1_PONAB	4.521e-15	56.25	Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3	[more]
AQP1_HUMAN	4.521e-15	56.25	Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3	[more]
AQP1_CANFA	7.635e-15	58.33	Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3	[more]
AQP1_SHEEP	1.675e-14	58.33	Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3	[more]
AQP1_BOVIN	1.675e-14	58.33	Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3	[more]
AQP1_RAT	4.774e-14	54.17	Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4	[more]
AQP1_MOUSE	4.774e-14	54.17	Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3	[more]
AQP1_PIG	6.202e-14	56.25	Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3	[more]
AQPA_RANES	1.157e-11	54.17	Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAH1BB03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BB03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC929692 ID=FC929692; Name=FC929692; organism=Citrus clementina; type=EST; length=789bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGC
CAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTANGATCAGTGGCAG
AGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGT
CCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCC