FC929694

Overview
NameFC929694
Unique NameFC929694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929694_ssr53 microsatellite FC929694_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11040 contig Ccv1_Contig11040:209..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929694 vs. ExPASy Swiss-Prot
Match: PMO25_SCHPO (Mo25-like protein OS=Schizosaccharomyces pombe GN=pmo25 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 58/188 (30.85%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQXMKKFFDYIQLPNFDIAADAAAT 757
            M  LF  +P++  D+VR   D +     + D ++S       E+ K ++ L+  L G +E EP ++  + L+ + ++ N   LL+  LPKL  E++KD   + + L R+ V S+    DY+ A+  +  +L++ Y   ++A   G++LREC RH+++   +L S+    FF  IQ  +FD+A+DA +T
Sbjct:    1 MSFLFNKRPKSTQDVVRCLCDNLPKLEINNDKKKS-----FEEVSKCLQNLRVSLCGTAEVEPDADLVSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDYMLAHPQIFPVLVSYYRYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFST 183          
BLAST of FC929694 vs. ExPASy Swiss-Prot
Match: DEE76_CHLPR (Degreening-related gene dee76 protein OS=Chlorella protothecoides GN=DEE76 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 51/156 (32.69%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  293 ESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSK-LIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQXMKKFFDYIQLPNFDIAADAAAT 757
            ESK++  + ++ K I  +K  ++G  E     E    + +E  R   +  L+T L  L+ E RKD  Q+   + R  +        DY+ A+ D+L  L  GYE+ ++AL+ G M RECIRH+ +A++VLE    ++ F+ + + +F++A+DA AT
Sbjct:   19 ESKQDRVVEDISKAIMSIKEAIFGEDEQSSSKEHAQGIASEACRVGLVSDLVTYLTVLDFETRKDVVQIFCAIIRITLEDGGRPGRDYVLAHPDVLSTLFYGYEDPEIALNCGQMFRECIRHEDIAKFVLECNLFEELFEKLNVQSFEVASDAFAT 174          
The following BLAST results are available for this feature:
BLAST of FC929694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PMO25_SCHPO1.759e-2030.85Mo25-like protein OS=Schizosaccharomyces pombe GN=... [more]
DEE76_CHLPR5.658e-1932.69Degreening-related gene dee76 protein OS=Chlorella... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BB05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929694 ID=FC929694; Name=FC929694; organism=Citrus clementina; type=EST; length=759bp
ACAACTCAGACAGCAAAATTAAATTCGAAAGCTGAAACCCTAAAGCCTAA
TTAGAAGAAGAAGATACACAATAGGAATCTGTGCGTCAAAGCCGAAAGCT
GAGGCGCTCTCAGCCTCGGCGAGTCAATCGGTCCAGCGCCTCTCGAGCTC
AGCCAGTTCAAGTTCGATTAACGAATTAGACCCTAACACAAAAATGAAGG
GACTTTTCAAATCCAAGCCTCGTACTCCCGTCGACATCGTCCGCCAAACT
CGGGATCTTATTATTTACGCCAATCGCAGCGCAGATGTTCGTGAATCGAA
GCGCGAAGACAAGATGGCAGAGTTATGTAAAAACATCAGGGAGTTAAAGT
CAATACTTTATGGCAATAGTGAATCTGAGCCAGTTTCAGAGGCATGTGCA
CAATTGACTGCAGAGTTCTTCAGGGAAAACACGTTACGGCTTTTGATAAC
TTGTCTTCCAAAGTTGAACTTGGAGGCAAGGAAAGATGCCACTCAGGTTG
TTGCTAATTTACAGAGGCAACAAGTTCACTCAAAGTTGATTGCCTCTGAC
TACTTAGAAGCAAACATAGATCTTTTGGATATTCTGATAGCTGGTTATGA
AAACACAGACATGGCTTTACATTATGGTGCTATGCTTAGGGAGTGTATTC
GTCATCAGAGTGTTGCAAGATATGTGTTGGAATCCCAGCANATGAAGAAG
TTTTTTGACTATATACAGCTTCCAAATTTTGACATTGCTGCAGATGCTGC
TGCAACTTT
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