FC929725

Overview
NameFC929725
Unique NameFC929725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.512e-43
Identity = 84/135 (62.22%), Postives = 101/135 (74.81%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+ + + ++F+P GLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL+L VAG EPG++GEEIAPLAKENVA P
Sbjct:  471 ADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP 605          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.622e-42
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+ + +P++F+P GLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  475 ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.622e-42
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+ + +P++F+P GLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  475 ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.165e-42
Identity = 84/135 (62.22%), Postives = 101/135 (74.81%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+ + +P++F+P GLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  475 ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.052e-41
Identity = 86/140 (61.43%), Postives = 100/140 (71.43%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            Q+   A+ + + ++F+P GLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  476 QMMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVVTTLKRAVKVVGTPAYHEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLALENVAAP 615          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.189e-14
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWE 328
            A+F L+P++++P GL Q++++RYGTVPIV +TGGLVDTVE G  G  +          +    +A+   +RRALA Y   + L E  + GM +D SW    +++E
Sbjct:  372 ADFFLMPSRYEPCGLNQMYSLRYGTVPIVRATGGLVDTVEGGLDGNGI--------LFEAFHKSALLAAIRRALALYADPSRLDEFRRRGMEKDFSWGASGRRYE 468          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEE 331
            A+ +L+P++++P GL QL AMRYGT+PI   TGGL DTVE+  TGF    +S           +A++  + R +  Y   Q   EM++  M +D SW   +KK+ E
Sbjct:  386 ADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS----------SSALTHAISRFIEIYNNKQKFLEMIREAMKRDFSWSNSSKKYIE 481          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 2
Query:    5 IRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGID 376
            I   A+F+L+P++F+P GL QL+A+RYGT+P+V  TGGL D+V     G        D    D     A+   + RA+  Y  +A L ++ + GM+QD SWK  AK++      L V GS  G D
Sbjct:  368 IEGAADFLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSVSHLDDGPNGTGIVFDHALPD-----ALEWAIGRAMTLYRDKATLNKVRQRGMSQDFSWKRSAKEY------LRVYGSMVGGD 481          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.604e-13
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 328
            +I   A+  L+P++F+P GL Q++++RYGTVP+V S GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  363 RIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRSVGGLADTVED-FDGFARGTGFRFAEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 325
            +I   ++  L+P++++P GL Q++++RYGTVPIV +TGGL DT+E  +  T    G   V+    D +D      TVR+AL  +  + A  ++M+NGMA+D SW   AK++
Sbjct:  364 KIEAGSDMFLMPSRYEPCGLNQIYSLRYGTVPIVRATGGLDDTIENWDPITNRGTGFKFVEYSGEDMLD------TVRKALELFKDKTAWQKLMRNGMARDFSWNTAAKEY 468          
The following BLAST results are available for this feature:
BLAST of FC929725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SSG1_MAIZE9.512e-4362.22Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ1.622e-4262.96Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI1.622e-4262.96Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL6.165e-4262.22Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT1.052e-4161.43Granule-bound starch synthase 1, chloroplastic/amy... [more]
GLGA_MYXXD3.189e-1440.00Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
GLGA_THEYD1.212e-1338.68Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_RHORT2.699e-1338.40Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]
GLGA_ANADE4.604e-1340.00Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_ACIBL6.013e-1338.74Glycogen synthase OS=Acidobacteria bacterium (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AA05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929725 ID=FC929725; Name=FC929725; organism=Citrus clementina; type=EST; length=651bp
CCAAATTCGGCCCAAGGCTAATTTTATTTTGATTCCAACCAAATTTAAAC
CTTGGGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATC
GTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGG
ATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAG
ATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGT
ACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTC
ATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAG
TTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCC
AAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTT
ATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTA
CTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAA
TAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATT
AAGTTCTGTTTTACAGTTTTGTAAAAAGGCTCCTGGAGGCTGTCGCCACT
C
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