FC929725

Overview
NameFC929725
Unique NameFC929725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1519..2169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   20 NFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 331
            +  L+P++F+P GL QL A+ YGTVPIV  TGGL DTV        EG  GF    FS D          A    V+RALA Y   +   ++M+ GM +D+SW+  A K+EE
Sbjct:  373 DMFLMPSRFEPCGLSQLIALSYGTVPIVRRTGGLADTVIDVTANPREG-NGFSFTEFSAD----------ACWDAVQRALAAYRDREGWRKIMRRGMLRDVSWRSAAGKYEE 473          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 328
            +I   A+  L+P++F+P GL Q++++RYGTVP+V + GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  363 RIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVED-FDGFARGTGFRFSEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 2
Query:    5 IRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 325
            I+  A+ IL+P++F+P GL QL A RYG +P+V+  GGLVDTV +           TG Q G          PV  A +S  +RR  A Y      + M +N MA D+SW  PA+ +
Sbjct:  363 IQGGADAILVPSRFEPCGLTQLAAQRYGAIPVVSLVGGLVDTVIDANPVAISAGVATGIQFG----------PVSEAGLSDGLRRTAALYADPDKWSRMQRNAMALDVSWTEPARNY 469          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_POLNA (Glycogen synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            +I   A+ +L+P++F+P GL QL+A+RYGTVP+V   GGL DTV          +  TGF  G          P   AA++  + +A+A +G  AL   +M  GMAQ+ SW   A ++
Sbjct:  370 RIMAGADAMLVPSRFEPCGLTQLYALRYGTVPVVRHVGGLADTVVGASEASVQADRATGFMFG----------PATPAALAQALLQAVAAHGQPALWHRLMLRGMAQNFSWTAAASQY 477          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 331
            +I    + +L+P++F+P GL QL+AMRYGT+PIV STGGL DTV++     Q G          P+    +  T++ A+ TY     +   +M+ GM +D SW+  A ++E+
Sbjct:  517 RITAGCDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQ 628          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 331
            +I    + +L+P++F+P GL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY     +   +MK GM+ D +W   A ++E+
Sbjct:  518 RITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 331
            +I    + +L+P++F+P GL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY     +   +MK GM+ D +W   A ++E+
Sbjct:  518 RITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 331
            +I    + +L+P++F+P GL QL+AMRYGT+P+V  TGGL DTVE      + G+ +       P+   ++ + +R A ATY    Q+   +M+ GM ++ SW+  A ++E+
Sbjct:  528 RITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQ 639          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHIEC (Glycogen synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   26 ILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            I+IP++F+P GL QL+A+RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  369 IIIPSRFEPCGLTQLYALRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 IRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 325
            I   A+  L+P++F+P GL QL++ RYGTVPIV   GGL DTVE+  T  ++ +        +P   A +   V RALA Y   +    + K GMA+D SW+  A ++
Sbjct:  363 IEAGADIFLMPSRFEPCGLNQLYSQRYGTVPIVRKVGGLADTVEDA-TPERLAAGQASGIVFEPAKPAFLLEAVYRALALYREPEVWRAVCKCGMAKDFSWRKSASRY 469          
The following BLAST results are available for this feature:
BLAST of FC929725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GLGA2_GEOMG1.026e-1241.96Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_ANAD21.340e-1239.09Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_ACICJ1.340e-1238.46Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]
GLGA_POLNA1.750e-1237.29Glycogen synthase OS=Polaromonas naphthalenivorans... [more]
SSY1_SOLTU2.984e-1236.61Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSJ2.984e-1236.61Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI2.984e-1236.61Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH2.984e-1235.71Soluble starch synthase, chloroplastic/amyloplasti... [more]
GLGA_RHIEC5.091e-1238.61Glycogen synthase OS=Rhizobium etli (strain CFN 42... [more]
GLGA1_METCA5.091e-1238.89Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AA05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929725 ID=FC929725; Name=FC929725; organism=Citrus clementina; type=EST; length=651bp
CCAAATTCGGCCCAAGGCTAATTTTATTTTGATTCCAACCAAATTTAAAC
CTTGGGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATC
GTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGG
ATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAG
ATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGT
ACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTC
ATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAG
TTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCC
AAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTT
ATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTA
CTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAA
TAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATT
AAGTTCTGTTTTACAGTTTTGTAAAAAGGCTCCTGGAGGCTGTCGCCACT
C
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