FC929725

Overview
NameFC929725
Unique NameFC929725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_ANASK (Glycogen synthase OS=Anaeromyxobacter sp. (strain K) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 328
            +I   A+  L+P++F+P GL Q++++RYGTVP+V + GGL DTVE+       TGF+   ++            A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  363 RIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVEDFDGVARGTGFRFSEYTPQ----------ALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 2
Query:   29 LIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 421
            L+P++F+P G+ QL AMRYG VP+V   GGLVDTV      ++  TGF    F       DPVD    +  VR   A     +  E+ + GM QD SW   A ++++  +  EV G  EPG D   +   ++   A P
Sbjct:  352 LMPSRFEPCGISQLLAMRYGCVPVVRKVGGLVDTVPPHDPAQQSGTGFCFDRF-------DPVDF--FTALVRSWEAFRHQDSWRELQRRGMRQDYSWARSAMEYDQ--MYREVCGLKEPGPDAAAVEQFSQGQDADP 478          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            QI+  A+ +L+P++F+P GL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A Y   A    +  NGM  D+SWK PA+ +
Sbjct:  365 QIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTADMLTAALTKTRALYADHATWRNLQINGMTTDVSWKNPAQHY 472          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOSL (Glycogen synthase 2 OS=Geobacter sulfurreducens GN=glgA2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.134e-11
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 328
            ++  L+P++F+P GL QL AMRYGTVP+V  TGGL DTV        EG TGF    F+ D          A    + RALA Y   ++   +M+ GM +D+SW   A ++E
Sbjct:  372 SDLFLMPSRFEPCGLSQLIAMRYGTVPVVRHTGGLRDTVVDVTRHPREG-TGFTFEDFTAD----------ACWEAIERALAGYRDRESWRRIMRRGMHRDVSWHNAAGRYE 472          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHILW (Glycogen synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   26 ILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            I+IP++F+P GL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  369 IIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGMLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   26 ILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            I+IP++F+P GL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  369 IIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQ-FSPVTETGLLQAIRRAMHFYADRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.934e-11
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 340
            A+ +L+P++F+P GL QL+AM YGTVP+V + GGL DTVE    +    +G      EA   +D         R   T    +   + K GM QDLSW   AK +EE LL
Sbjct:  638 ADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRT----SWEGLQKRGMMQDLSWDNAAKLYEEVLL 743          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.934e-11
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 331
            +I    + +L+P++F+P GL QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+     +   +MK GM +D +W   A+++E+
Sbjct:  524 RITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQ 634          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.934e-11
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            Q+   A+  ++P++F+P GL Q++++RYGTVP+V +TGGL DTV +          +   +  D     A++  + RALA Y   A    +M+ GMAQD SW   A+ +
Sbjct:  367 QLEAGADIFVMPSRFEPCGLNQMYSLRYGTVPVVRNTGGLADTVVDADPAHLAARDATGIQ-FDEATPQALADALARALALYHDPACWKRLMQAGMAQDFSWGRSAEAY 474          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.526e-11
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEG-----FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 325
            QI+  A+ +L+P++F+P GL QL A+RYG VP+VA  GGL DTV +       TG   G  FS       PV    ++  + +  A +   A    +  NGM  D+SWK PA+ +
Sbjct:  365 QIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-------PVTAQMLAKALTKTAALHADHAAWRNLQINGMTTDVSWKNPAQHY 472          
The following BLAST results are available for this feature:
BLAST of FC929725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GLGA_ANASK6.649e-1235.65Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_SYNS38.683e-1236.23Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_RHOPS8.683e-1238.26Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA2_GEOSL1.134e-1140.18Glycogen synthase 2 OS=Geobacter sulfurreducens GN... [more]
GLGA_RHILW1.481e-1137.62Glycogen synthase OS=Rhizobium leguminosarum bv. t... [more]
GLGA_RHIE61.481e-1137.62Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]
SSY21_ORYSJ1.934e-1140.00Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSY1_WHEAT1.934e-1136.61Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_THISH1.934e-1135.78Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]
GLGA_RHOP22.526e-1137.39Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AA05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929725 ID=FC929725; Name=FC929725; organism=Citrus clementina; type=EST; length=651bp
CCAAATTCGGCCCAAGGCTAATTTTATTTTGATTCCAACCAAATTTAAAC
CTTGGGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATC
GTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGG
ATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAG
ATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGT
ACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTC
ATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAG
TTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCC
AAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTT
ATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTA
CTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAA
TAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATT
AAGTTCTGTTTTACAGTTTTGTAAAAAGGCTCCTGGAGGCTGTCGCCACT
C
back to top