FC929725

Overview
NameFC929725
Unique NameFC929725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_SYNSC (Glycogen synthase OS=Synechococcus sp. (strain CC9605) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 2
Query:   29 LIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 421
            L+P++F+P G+ QL+AMRYG+VP+V   GGLVDTV         G+ F  D    +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  L+  +V G  EP  D   +   ++   A P
Sbjct:  352 LMPSRFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHIPAADSGTGFCFD--RFEPVDF--YTALVRAWEAFRHRDSWTELQKRGMNQDYSWDRSAVDYD--LMYKDVCGIKEPTPDAALVEQFSQGQAADP 478          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_THIDA (Glycogen synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 316
            QI   A+  L+P++F+P GL Q++++RYGT+PIV  TGGL DT+ +      +   S +    D  DVA     VRRALA Y   +L   + + GM     W+  A
Sbjct:  372 QIEAGADMFLMPSRFEPCGLNQMYSLRYGTLPIVFKTGGLADTIVD-TNEASLADGSANGFVFDTPDVAHFVDAVRRALALYRQPSLWRRVQQTGMRLSFDWRESA 476          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPB (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 2
Query:    5 IRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNLEVA 355
            I+  A+ +L+P++F+P GL QL A+RYG VP+VA  GGL DTV +      + +         PV    ++  + +  A Y  +A  + ++ NGM  D+SW+ PA+ + +   +L  A
Sbjct:  366 IQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVDA-NEMAIAAGVATGVQFSPVTGDMLAAALSKTRALYADRAAWQALQHNGMTADVSWRNPAQHYAQLYRSLLAA 482          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 40/114 (35.09%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 331
            +I   ++F ++P+ F+P GL Q++++RYGT+PIV +TGGL D+V    E+  TG     +S D +A+       V T  RR        A+A ++ N MA+  +W+  A ++EE
Sbjct:  373 RIEAGSDFFVMPSAFEPCGLNQMYSLRYGTLPIVRATGGLDDSVENFDEQNLTGNGFKFWSHDADALFDTVGWTVHTWYRR------KDAMAALIGNAMAKRFTWEDSAARYEE 480          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 325
            A+F+L+P++F+P GL Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  363 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 325
            A+F+L+P++F+P GL Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  363 ADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPW (Glycogen synthase OS=Synechococcus sp. (strain WH7803) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 2
Query:   29 LIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 421
            L+P++F+P G+ QL+AMRYG VP+V   GGLVDTV      ++  TGF    F       +PVD    +  VR   A    ++  E+ + GM QD SW   A +++   +  +V G  EP  D   +   ++   A P
Sbjct:  352 LMPSRFEPCGISQLYAMRYGCVPVVRKVGGLVDTVPPHDPRQKSGTGFCFDRF-------EPVDF--YTALVRAWEAFRHPESWKELQRRGMEQDYSWARSALEYDR--MYRDVCGLKEPSPDAAAVEQFSQGQEADP 478          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 346
            QI+  A+ +L+P++F+P GL QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  365 QIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 346
            QI+  A+ +L+P++F+P GL QL A+RYG VP+VA  GGL DTV +     +M + +     V   PV   A+     +  A +    A   +  NGM  D+SWK PA+ + +   +L
Sbjct:  365 QIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVD---ANEMATATGVATGVQFAPVTTDALIKAFGKTRALFADVVAWRNLQINGMTTDVSWKNPAQHYAKLYRDL 479          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: GLGA_RHILO (Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 2
Query:   26 ILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 331
            I+IP++F+P GL QL+ +RYG VP+VA TGGL DT+ +          +   +   P +  A+   +RR +  Y   A  E + + GM  D+SW   A+K+ E
Sbjct:  369 IIIPSRFEPCGLTQLYGLRYGCVPVVARTGGLADTIIDANEAAMAAGVATGLQFA-PNNGGAMLHAIRRLVDAYADPAAFETIQRQGMKADVSWDKSAEKYLE 470          
The following BLAST results are available for this feature:
BLAST of FC929725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GLGA_SYNSC5.628e-1136.09Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_THIDA7.351e-1137.74Glycogen synthase OS=Thiobacillus denitrificans (s... [more]
GLGA_RHOPB7.351e-1133.05Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA1_GEOSL7.351e-1135.09Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
GLGA_XANCP9.601e-1134.62Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC89.601e-1134.62Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_SYNPW9.601e-1134.06Glycogen synthase OS=Synechococcus sp. (strain WH7... [more]
GLGA_RHOPT9.601e-1135.59Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPA9.601e-1135.59Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_RHILO9.601e-1135.92Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AA05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929725 ID=FC929725; Name=FC929725; organism=Citrus clementina; type=EST; length=651bp
CCAAATTCGGCCCAAGGCTAATTTTATTTTGATTCCAACCAAATTTAAAC
CTTGGGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATC
GTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGG
ATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAG
ATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGT
ACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTC
ATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAG
TTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCC
AAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTT
ATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTA
CTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAA
TAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATT
AAGTTCTGTTTTACAGTTTTGTAAAAAGGCTCCTGGAGGCTGTCGCCACT
C
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