FC929742

Overview
NameFC929742
Unique NameFC929742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = -3
Query:  451 GGANELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ--WIFWVGPFIGAFVAAFYHQYI 792
            G A     GY+    L  E++ T   +  +  ATD +  A        APL IG A+ ++HL +IP+T T +NPARS G A+       W  Q  W+FW+ P IGA + A  ++ I
Sbjct:  118 GYAEHSPGGYSLLAALVCEVVMTMFFLLVIMGATDKRAPAG------FAPLAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG---GWAVQQLWLFWLAPIIGAVLGAKVYRLI 224          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = -3
Query:  448 GANELAEG-YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 789
            G  EL+ G Y+   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    W+FWV P +GA + A   + +L
Sbjct:  118 GYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  448 TGLGAEIIG---TFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 753
            TG GA ++     FVLVYTVF+A+DP+R      +P+ + P+ IGF      LA  P +G  +NPA +FG+A++Y   K   +Q ++WVGP +G   AA  +  ++
Sbjct:  142 TGFGASVLEGVLAFVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFK---NQAVYWVGPLLGGATAALVYDNVV 239          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = -3
Query:  451 GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAA-FYHQYI 768
            GY     L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL +IP+T T +NPARS G A ++  + A  + W+FW+ P +GA +A  FYH ++
Sbjct:  129 GYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPA-LFVGDWAIAELWLFWLAPIVGAALAGLFYHAFL 228          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  451 YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 765
            Y+    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  W+FW+ P  GA V A  ++ +
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  451 YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 765
            Y+    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  W+FW+ P  GA V A  ++ +
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -3
Query:  460 GGANELAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 792
            GG  EL        G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV       +   W++WVGP IG  +A   +
Sbjct:  135 GGTTELE-------GVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---AAADFAGNWVYWVGPLIGGGLAGLVY 232          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = -3
Query:  448 GANELAEG-YNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 789
            G  EL+ G Y+   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    W+FWV P +GA + A   + +L
Sbjct:  118 GYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  460 GYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 768
            G ++  G+  E++ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV       +   W++WVGP +G  +A   +
Sbjct:  135 GISELEGVVFEVVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = -3
Query:  451 GGANELAEGYNKGTG----LGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 792
            GG    A G + G G    L  EI+ TF LVYTV++ A DPK  +    +  +AP+ IGF V    LA    +G  +NPA +FG AV+      W + W++W GP IG  +A   + ++
Sbjct:  127 GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLIGGGLAGIIYDFV 238          
The following BLAST results are available for this feature:
BLAST of FC929742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AQPZ_CHRVO9.848e-1235.34Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]
AQPZ_BRUSU9.848e-1235.65Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
TIP51_ARATH1.286e-1138.68Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQPZ_GLOVI1.286e-1134.58Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
AQPZ_BORPA1.286e-1135.24Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR1.286e-1135.24Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
TIP22_MAIZE1.680e-1140.18Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQPZ_BRUME1.680e-1135.65Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
TIP21_MAIZE2.194e-1138.46Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP12_ARATH2.865e-1136.97Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929742 ID=FC929742; Name=FC929742; organism=Citrus clementina; type=EST; length=815bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCA
AGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGAG
AAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTCC
GGTGCCCTTGTTGTATCCCTCAGCTAGCTCATTGGCCCCACCTCCATACC
TGTTGTAATATGATT
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