FC929742

Overview
NameFC929742
Unique NameFC929742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = -3
Query:  451 LAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 777
            L+EG   G  L  EI+ TF LVYTV++ A DPK+     ++ ++AP+ IGF V    L     TG  +NPA SFG AV+     +W + W++W GP IG  +A   ++ +
Sbjct:  133 LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 43/112 (38.39%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  442 LAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 777
            LA G     G   E   TFVL+  V S  D +R     ++   AP+ +G A+   HLA I  TG+ +NPARSFG AV  N +  W + W++W GP +G  VA   ++ + RA
Sbjct:  138 LAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK----NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVGGVVAGITYRALFRA 243          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  460 LAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 777
            +A G N   G+  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+      +   WI+W GP IG  +A F +
Sbjct:  133 VAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = -3
Query:  448 LAEGYNKGTGLGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 777
            LA G   G  +  E + TF  VY  ++   DPKR     H+  +APL +GF +    LA  P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y+L
Sbjct:  144 LASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRG----HLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLL 247          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  460 LAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 777
            +A G N   G+  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+      +   WI+W GP IG  +A F +
Sbjct:  133 VAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = -3
Query:  448 GANELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 789
            G + L      G G   E++ T   +  VF++ D +   R    P  A LP+GF++ + HL  IP TG G+NPARSF  AVI    + + + W+FW GP +GA +AA  ++  L
Sbjct:  117 GLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 42/112 (37.50%), Postives = 61/112 (54.46%), Query Frame = -3
Query:  448 NELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 783
            N L      G  +  E+  T  LV  +F++TD +R       P L+   IGF+V + HL  I  TG  +NPARS   A++  K   +DD W+FW+GP +GA VA+  + Y+L
Sbjct:  119 NALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVG-TPALS---IGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = -3
Query:  448 GGGANELAEGYNKGTGLGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 795
            G   + LA G +   G+  EII TF L++TV++   DPK+ + D   P+L     GF V    LA    +G  +NPARSFG A++      W D W++WVGP IG  +A F ++ +L
Sbjct:  123 GTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  472 ANELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVA 786
            AN L  G ++  GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARS GAAV       +   WI+W+GP +G+ +A
Sbjct:  165 ANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILA 262          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  460 LAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 777
            +A G +   G+  EII TF LVYTV++ A DPK+ +    + V+AP+ IGF V    LA  P +G  +NPARSFG AV       +   WI+W GP IG  +A F +
Sbjct:  133 VAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIY 232          
The following BLAST results are available for this feature:
BLAST of FC929742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
TIP1_MEDSA4.723e-1439.09Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP_CICVR4.723e-1438.39Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
TIP2_TOBAC8.056e-1442.99Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP32_MAIZE1.052e-1337.84Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP1_TOBAC1.052e-1342.99Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
MIP_CHICK1.052e-1336.84Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP2_BOVIN1.052e-1337.50Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
TIP41_ARATH1.374e-1338.46Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
AQY1_YEAST1.374e-1340.00Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
TIP_ANTMA2.344e-1342.99Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929742 ID=FC929742; Name=FC929742; organism=Citrus clementina; type=EST; length=815bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCA
AGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGAG
AAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTCC
GGTGCCCTTGTTGTATCCCTCAGCTAGCTCATTGGCCCCACCTCCATACC
TGTTGTAATATGATT
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