FC929742

Overview
NameFC929742
Unique NameFC929742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = -3
Query:  451 GANELAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 789
            GA  L+ G      +  E++ TF LVYTV++ A DPK+      + V+AP+ IGF V    LA     G  +NPA SFG AV+      W++ W++WVGP  GA +AA  +  I
Sbjct:  131 GAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKG----DLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWENHWVYWVGPLAGAAIAALVYDII 237          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = -3
Query:  448 NELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 783
            N L      G  +  E+  T  LV  +F++TD +RS           L IGF+V + HL  I  TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L
Sbjct:  119 NALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.998e-13
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = -3
Query:  424 LAEGYNKGTGLGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKAL 777
            LA G      +  E + TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y++  +A  A+
Sbjct:  139 LASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAV 250          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = -3
Query:  436 NELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 783
            N L      G  +  E+  T  LV  +F++TD +R            L IGF+V + HL  I  TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L  +A
Sbjct:  119 NALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLLFPSA 227          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  436 LAEGYNKGTGLGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 777
            LA G      +  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y++  +A
Sbjct:  140 LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLVIPSA 247          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = -3
Query:  445 GANELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 789
            G +      N    +  E + TF+LV+ V + +DP R      +   APL +G A+   HL  I ++G  +NPARSFG AV+   +  W   W++WVGP  G  +A   ++ I +
Sbjct:  125 GVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGRQ----DIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVV---QGVWTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = -3
Query:  460 LAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 777
            +A G     G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV+      +   WI+WVGP +G  +A   +
Sbjct:  133 VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  451 ANELAEGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 786
            A  L+ G      +  EI+ TF LVYTV++ A DPK+      + ++APL IG  V    L      G  +NPA SFG AV+      W + W++WVGPFIGA +AA  +  I
Sbjct:  132 AFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG----DIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  475 GGANELAEGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFV 792
            G A+    GY  G G  +E++ T + +  +  ATD +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    W+FWV P IGA +
Sbjct:  120 GYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALQQLWLFWVAPLIGAAI 218          
BLAST of FC929742 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  454 NELAEGYNKGTGLGA------EIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 783
            N    G++   G+G       E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA +FG +++  +   W   WIFWVGP +GA +AA  ++Y
Sbjct:  127 NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAALVYEY 236          
The following BLAST results are available for this feature:
BLAST of FC929742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
TIP12_MAIZE3.061e-1339.47Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
AQP2_MOUSE3.061e-1336.61Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP31_MAIZE3.998e-1336.13Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQP2_RAT5.222e-1335.34Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP31_ORYSJ8.907e-1336.52Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
AQP_DROME1.163e-1233.04Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIP22_ARATH1.519e-1240.19Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP13_ARATH1.519e-1239.82Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
AQPZ_PSEPK1.519e-1236.79Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIPA_PHAVU2.592e-1238.46Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929742 ID=FC929742; Name=FC929742; organism=Citrus clementina; type=EST; length=815bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCA
AGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGAG
AAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTCC
GGTGCCCTTGTTGTATCCCTCAGCTAGCTCATTGGCCCCACCTCCATACC
TGTTGTAATATGATT
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