FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.936e-43
Identity = 92/205 (44.88%), Postives = 133/205 (64.88%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKK 744
            +EYDYLFK+++IGDSG GKS+LL RF  N +     STIGV+F  +T++++  TIK QIWDTAGQER+R ITS YYRGA G + VYDVT   +F++++  WL+++  +A SN+  ++IGNK DL   R V+ ++A+  AE+  +++IE SA    NVEKAF TI   +   +++         PSN     T+ +  ASK  T +
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQ--------YPSN-APASTVSLNTASKVPTNR 197          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 84/184 (45.65%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY-RIISKKSLSSGE 672
            R    Y++LFK +++GDS VGKSNLL +F    F   S  TIGVEF +R++ +  + IK QIWDTAGQE++R+IT AYYRGA+ A++VYD+T+  +FE+++ WL + R  +  ++  ++IGNK DL+  R V+T +A+ +AE+ GL F ETSA  A+NV++AF+    +I  ++ S   L S E
Sbjct:   16 RKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNE 199          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 92/205 (44.88%), Postives = 132/205 (64.39%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKK 744
            +EYDYLFK+++IGDSG GKS+LL RF  N +     STIGV+F  +T++++  TIK QIWDTAGQER+R ITS YYRGA G + VYDVT   +F++++  WL+++  +A SN+  ++IGNK DL   R V  ++A+  AE+  +++IE SA    NVEKAF TI   +   +++         PSN     T+ +  ASK  T +
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQ--------YPSNAPT-STVNLSNASKVTTNR 197          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 90/206 (43.69%), Postives = 130/206 (63.11%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCS 756
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T+++ G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D++  R V     +  A    + F ETSA   IN+EKAF T+  +I +    K     EP   N+    T   GG +     K CCS
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVK-----EPDRENVDISTT---GGGTGL---KKCCS 200          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.100e-42
Identity = 95/205 (46.34%), Postives = 126/205 (61.46%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A  NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF      I        + SGE  P  +  G  I  G AS    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI-----PNKIESGELDPERM--GSGIQYGDASLRQIRQP 200          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.436e-42
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL++I          SGE  P  +  G  I  G  S    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI---------DSGELDPERM--GSGIQYGDISLRQLRQP 200          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.436e-42
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL++I          SGE  P  +  G  I  G  S    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI---------DSGELDPERM--GSGIQYGDISLRQLRQP 200          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.436e-42
Identity = 92/206 (44.66%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            +YD+LFK+++IGDSGVGKS+LL RF  N F     +TIGV+F  RT+++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + R   K +L+  +      ++ Q  VV     +  KK CC
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ------QQQQNDVVKLTKNSKRKKRCC 201          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.436e-42
Identity = 92/206 (44.66%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            +YD+LFK+++IGDSGVGKS+LL RF  N F     +TIGV+F  RT+++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + R   K +L+  +      ++ Q  VV     +  KK CC
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ------QQQQNDVVKLTKNSKRKKRCC 201          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.436e-42
Identity = 92/206 (44.66%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            +YD+LFK+++IGDSGVGKS+LL RF  N F     +TIGV+F  RT+++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + R   K +L+  +      ++ Q  VV     +  KK CC
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ------QQQQNDVVKLTKNSKRKKRCC 201          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1_THEPA4.936e-4344.88Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB2B_DICDI8.419e-4345.65Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB1_THEAN8.419e-4344.88Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB10_DISOM8.419e-4343.69Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB4B_DANRE1.100e-4246.34Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB4B_RAT1.436e-4245.93Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.436e-4245.93Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB35_RAT1.436e-4244.66Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.436e-4244.66Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.436e-4244.66Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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