FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 2.271e-72
Identity = 139/214 (64.95%), Postives = 171/214 (79.91%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP----SNIKEGQTIVVGGASKA-NTKKPCCSS 759
            ++ DY+FKVVLIGDS VGKS LL+RF RNEF L+SK+TIGVEF TRTL ++ RT+KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F++V+RWL+ELR HAD NIVIM+IGNK+DL  LR V TEDA+ +AERE L F+ETSALE+ NVE AF T+L+EIYRI+SKK+L + E       S++ +G  IVV G   A  TK  CC S
Sbjct:   13 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.127e-71
Identity = 133/207 (64.25%), Postives = 171/207 (82.61%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            EEYDYL+K+VLIGDSGVGKSNLLSRFTRNEF LE+KSTIGVEFATRT+Q EG+TIKAQ+WDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+++V RW+ ELR++AD NI IM++GNK+DL+HLR V+T++A+ ++E+  L+FIETSAL++ NVE AFQ IL++IY I+S+ S S+G P  +     +TI++   S+    K  C
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTG-PQTTIDSNTETIILPTTSEPPAAKSGC 213          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.055e-69
Identity = 128/213 (60.09%), Postives = 171/213 (80.28%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA----PSNIKEGQTIVVGGASKANTKKPCCSS 759
            ++ DY+FKVVLIGDS VGKS +L+RF RNEF L+SK+TIGVEF TRTL ++ +++KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  TF+++ RWL+ELR HAD NIVIM+IGNKTDL+  RAV TEDA+ +A++EGL F+ETSA+EA N+E AF T+L+EI+ I++KK+L++ +      P+++   + +V G       KK CCSS
Sbjct:   10 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCSS 222          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.378e-69
Identity = 133/212 (62.74%), Postives = 168/212 (79.25%), Query Frame = 1
Query:  142 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP---APSNIKEGQTIVVGGASKANTKK--PCCSSS 762
            DY+FKVVLIGDS VGKS +L+RF RNEF L+SKSTIGVEF TRTL ++ +T+KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  TF+++ RWL+ELR+HAD NIVI++IGNK DL + R V TEDA+ +AE+EGL F+ETSALEA NVE AF T+L+EIY I++KKSL++ E      S    GQ I++ G ++    K   CC +S
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.394e-68
Identity = 126/213 (59.15%), Postives = 169/213 (79.34%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE----PAPSNIKEGQTIVVGGASKANTKKPCCSS 759
            ++ DY+FKVVLIGDS VGK+ +L+RF RNEF L+SK+TIGVEF TRTL ++ +++KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  TF+++ RWL+ELR HAD NIVIM+ GNKTDL+  RAV TEDA+ +A++EGL F+ETSA+EA  +E AF T+L+EI+ I++KK+L++ E      P+++   + +V G       KK CCSS
Sbjct:   10 QKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.743e-64
Identity = 115/188 (61.17%), Postives = 156/188 (82.98%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 699
            +YD LFK+VLIGDSGVGKSNLLSRFT+NEF ++SKSTIGVEFATRTL+++G+ IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++AD N+ + +IGNK+DL HLRAV TE+++++A+   L F ETSAL + NV+KAF+ +++ IY+ +SK  +  G+ + +    G
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANG 196          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 8.652e-64
Identity = 122/214 (57.01%), Postives = 164/214 (76.64%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI-----KEGQTIVVGGASKANTKKP---CC 753
            +YDYLFK+VLIGDSGVGKSNLLSRFT +EF +ESKSTIGVEFATRT++VE + IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++AD N+ + +IGNK+DL HLRAV T++A+++A    + F ETSAL + NV+KAF+ ++  I++++SK  +       +N+      +G TI +  A K + KK    CC
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 4.294e-63
Identity = 122/215 (56.74%), Postives = 158/215 (73.49%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCSS 759
            M  R DE+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A  +AE  GL F+ETSAL++ NVE AFQT+L EI+  +SK+  +S   +   +   Q    G       K+ CC S
Sbjct:    1 MGNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSAITLGNAQ---AGQDPGPGEKRACCIS 212          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.635e-62
Identity = 120/215 (55.81%), Postives = 158/215 (73.49%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCSS 759
            M  R +E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    IKAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  ++       +  G     G       K+ CC S
Sbjct:    1 MGNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNNARTNAVTLGSGP---AGQELGPGEKRACCIS 212          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.804e-61
Identity = 113/210 (53.81%), Postives = 163/210 (77.62%), Query Frame = 1
Query:  142 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVV---GGASKANTKKPCCSSS 762
            +YLFK+V+IGDS VGKSNLLSR+ RNEF   SK+TIGVEF T+++++EG+ +KAQIWDTAGQER+RA+TSAYYRGA+GAL+VYD+T+ TTFE+V RWL EL+ H+D+ +  M++GNK DL+++RAV+ E+ ++ AE EGL F+ETSAL++ NV+ AF+ ++ +IY  +S+K L+S +     +   +  +V     ASK ++   CCSS+
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNS-DTYKDELTVNRVSLVKDDNSASKQSSGFSCCSST 218          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ2.271e-7264.95Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI1.127e-7164.25Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11D_TOBAC1.055e-6960.09Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11A_LOTJA1.378e-6962.74Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11C_TOBAC3.394e-6859.15Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT31_YEAST1.743e-6461.17GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPT32_YEAST8.652e-6457.01GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB25_MOUSE4.294e-6356.74Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_BOVIN3.635e-6255.81Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
ARA1_ARATH1.804e-6153.81Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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