FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 66/191 (34.55%), Postives = 105/191 (54.97%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI--YRIISKKSLSSGEPAPSNIKEGQTIVV 714
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     VE AF T++ EI  YR+   K +S  E  P  +K  + +++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRL---KKISKEEKTPGCVKIKKCVIM 189          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FKVVL+GD G GK+  + R    EF  E  +T+GVE  T         IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W K+L      NI I++ GNK D+K ++  A      +  ++ L + + SA    N EK F
Sbjct:   11 FKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDVKDMKVKAKPIL--FHRKKNLQYYDISARSNYNFEKPF 161          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.113e-21
Identity = 58/185 (31.35%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGR-TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            M+   +E  D   K+V++GD   GK++L + F +  F  + K TIG++F  R + + G   +  Q+WD  GQ     +   Y  GA G LLVYD+T   +FEN+  W   +K + + +++  ++ ++GNK DL+H+R V  +    + +  G S    SA    +V   FQ + +EI  I   K+
Sbjct:    1 MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKA 185          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAL_DISOM (Ras-related protein O-RAL OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 62/185 (33.51%), Postives = 108/185 (58.38%), Query Frame = 1
Query:  148 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI-YRIISKKSLSSGEPAPSNIK 693
            L KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++G  ++  I DTAGQE Y AI   Y+R   G L V+ +T+  +F     + ++ LR  A+ + I ++++GNK+DL+  R V+ E+A+S AE  G+ ++ETSA    NV+K F  ++ E+  + +S+    +G+ +  N K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEQESFTATVEFREQILRVKAEEDKIPLLLVGNKSDLEDRRQVSIEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREVRAKKMSENKDKNGKKSSRNKK 197          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 64/204 (31.37%), Postives = 109/204 (53.43%), Query Frame = 1
Query:  148 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR--DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            L KV+++G  GVGKS L  +F  +EF  + + T    +  + + ++G  ++  I DTAGQE Y AI   Y+R   G LLV+ +T+  +F   + + +++      +  I ++++GNK+DL+  R V  ++A+  AE  G+ ++ETSA    NV+K F  ++ E    I  K +S  +      K G+       SK + K+ CC
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMRE----IRAKKMSENKD-----KNGRK---SSKSKKSFKERCC 204          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.066e-21
Identity = 58/185 (31.35%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGR-TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            M+   +E  D   K+V++GD   GK++L + F +  F  + K TIG++F  R + + G   +  Q+WD  GQ     +   Y  GA G LLVYD+T   +FEN+  W   +K + + +++  ++ ++GNK DL+H+R V  +    + +  G S    SA    +V   FQ + +EI  I   K+
Sbjct:    1 MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKA 185          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL-RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPS 684
            +K+V++G  GVGKS L  +F +N F  E   TI   +  R  QV+  T    I DTAGQ+ Y A+   Y R   G L VYDVT  T+FE ++   +++ R   +  + I+++GNK DL++LR V   +    A+   + F+ETSA + +NV++ F  ++ EI     KKSL   EP  S
Sbjct:    7 YKLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDSYR-RQCQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREI-----KKSLK--EPGRS 177          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK+VL+GD G GK+  + R    EF  E  +T+GVE  T         IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W K+L      NI I++ GNK D+K ++  A      +  ++ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDIKDMKVKAKPIL--FHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 67/203 (33.00%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  154 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL---KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            KVVL+G + VGK+ +++R+T  +F  ++ +TIG  F+++ + V    +   IWDTAG ERY+A+  +YYR A  A++ YD+T   ++E V+ W +EL  + +  I I ++G K DL     ++AV  E+ +  A R      ETS+    NV   FQTI  +      K++ +   P  SN      +V         K  CC
Sbjct:    9 KVVLLGYASVGKTCIVTRYTSGQFG-DTHTTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQN-EPEIEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTIAED----FCKRTNNGTNPVNSN---PSNVVNVNTQTQKKKGGCC 202          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.310e-21
Identity = 53/176 (30.11%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  121 RRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-----NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +R + +     KV+ +G++ VGKS ++ R+    F  +  +TIG+++    +QV  R IK  I+D AG   +  + + +Y+ + G +LVYDV    +F+ +  WL E++    S     NI+ ++  NK DL   R V   + + +AE  G  + ETSA     + + FQ+  S I
Sbjct:    7 KRRENKKSLRVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSI 182          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_MOUSE3.113e-2134.55GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RANT_MOUSE3.113e-2137.01GTP-binding nuclear protein Ran, testis-specific i... [more]
RAB28_MOUSE3.113e-2131.35Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]
RAL_DISOM4.066e-2133.51Ras-related protein O-RAL OS=Discopyge ommata PE=2... [more]
RALB_MOUSE4.066e-2131.37Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RAB28_RAT4.066e-2131.35Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RASB_DICDI5.310e-2137.43Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RANT_RAT5.310e-2136.36GTP-binding nuclear protein Ran, testis-specific i... [more]
RAB24_DICDI5.310e-2133.00Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
DJC27_DANRE5.310e-2130.11DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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