FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.356e-61
Identity = 119/215 (55.35%), Postives = 157/215 (73.02%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCSS 759
            M    +E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S       +   Q    G       K+ CC S
Sbjct:    1 MGNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITLGSAQ---AGQEPGPGEKRACCIS 212          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.249e-61
Identity = 120/213 (56.34%), Postives = 159/213 (74.65%), Query Frame = 1
Query:  115 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            M    +E+Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S  P  + I  G +   G       K+ CC
Sbjct:    1 MGNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS--PRSNAIALG-SAQAGQEPGPGQKRACC 210          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.579e-60
Identity = 111/205 (54.15%), Postives = 155/205 (75.61%), Query Frame = 1
Query:  142 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCS 756
            +YLFK+V+IGDS VGKSNLL+R+ RNEF   SK+TIGVEF T+++ ++G+ +KAQIWDTAGQER+RA+TSAYYRGA+GAL+VYD+T+ +TFENV RWL EL  H+D+ +  M+IGNK DL+ +RAV+ E+ +S AE EGL F+ETSAL++ NV+ AF+ ++ EIY  IS+K L+S +     +   +  +V   ++      CCS
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS-DSYKEELTVNRVSLVKNENEGTKTFSCCS 213          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.265e-58
Identity = 100/175 (57.14%), Postives = 147/175 (84.00%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 654
            +EE +YLFK+V+IGDS VGKSNLL+RFTRNEF  ++K+TIGV+F T++++++ +TI AQ WDTAGQER+RA+TS YYRGA+GA++VYD+T   +F+NV+RWL ELR+ A+ +I+IMM+GNK+DL+  R V T++AQ++AE   +SF+ETSAL + NV ++F+ +L++IY ++S K
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.444e-50
Identity = 99/214 (46.26%), Postives = 145/214 (67.76%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK-----SLSSGEPAPSNIKEGQTIVVGGASKANTKKP---CC 753
            EYDYL K+V+IGDSGVGKSNLLSR+ +NEF +   STIGVEF+T+TL+++ + IK Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++    +F N+ +WLK+ R++A  +  IM++GNK+DLK  R V+T + + +AE+  + FIETSAL++ NVE AF  + + IY  + K       +++     SNI  G    +    +    KP   CC
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFKNKTMTLDINNNGNNNSNIMVGDCEPIQFDQRYTINKPVYDCC 220          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.287e-50
Identity = 104/218 (47.71%), Postives = 138/218 (63.30%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS-------------KKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA+ N+ IM+IGNK DL H RAV TE+ + +A+  GL F+ETSA  A NVE+AF     EIY+ I              K     G   P  +K G+    GGA+K+++   CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGE----GGAAKSSS---CC 213          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.341e-48
Identity = 100/208 (48.08%), Postives = 138/208 (66.35%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCSS 759
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   + VATE A+++A+  G+ F+ETSA  A NV++AF  + + I      K   + +PA +N +     + G     N K  CCSS
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI------KDRMASQPAAANARPATVQIRG--QPVNQKTSCCSS 203          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.987e-48
Identity = 101/206 (49.03%), Postives = 138/206 (66.99%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   R V+T+ A+ +AE  G+ F+ETSA  A NVEKAF  + ++I     KK +++   AP   K G  +  G    +N    CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI-----KKRMANAPVAP---KAGVKLTPGQQVPSNGGSKCC 201          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.902e-48
Identity = 103/218 (47.25%), Postives = 136/218 (62.39%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS-------------KKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA+ N+ IM+IGNK DL H RAV TE+ + +A+  GL F+ETSA  A NVE+AF     EIY+ I              K    +G   P   K G+    G A K+++   CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGE----GDARKSSS---CC 213          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.692e-48
Identity = 97/213 (45.54%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL-KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCCSS 759
            R   +YDYL K++LIGDSGVGKS LL RF+   F     +TIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W++ +  HA  N+  +++GNK D+ +  RAV T   Q+ A+  G+ F ETSA   +NVE+ F +I  +I + +S    +     P+ IK  QT    GA +A  K  CC +
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSD---TDSRAEPATIKISQTDQAAGAGQATQKSACCGT 216          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_HUMAN2.356e-6155.35Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT5.249e-6156.34Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
ARA4_ARATH7.579e-6054.15Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11C_DICDI9.265e-5857.14Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI2.444e-5046.26Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTC4_CHLRE9.287e-5047.71GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPTM2_MAIZE1.341e-4848.08GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPT1_PHYIN2.987e-4849.03Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
YPTV4_VOLCA3.902e-4847.25GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
ARA3_ARATH8.692e-4845.54Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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