FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK-ELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEIYRIISKKS 657
            +K+V++GD GVGKS L  +F +  F  +   TI   +   T +++ +     + DTAGQE + A+   Y R   G L+VY VT   +FE+V R+ +  LR     +  ++++ NK DL HLR +  E  +  A +  + +IETSA +  +NV+KAF  ++  I + I +KS
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQIPEKS 183          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 60/170 (35.29%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK DL   R+V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++  T    I DTAGQE Y A+   Y R   G L VY +T  ++F+ ++ + ++ LR      + ++++GNK DL+  R V T + Q  A   G  F+ETSA   +NVE++F  ++ EI
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREI 164          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 58/162 (35.80%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++GD GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V +  +FENV+ + +++R   DS ++ ++++GNK DL   R+V        A+  G+  ++TSA   + V++AF T++ EI
Sbjct:    4 YKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRRVKDSDDVPMVLVGNKCDLSS-RSVDFRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV 711
            FK+VL+GD G GK+  + R    EF  +  +TIGVE    +       IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F  +  ++      + ++S   AP  ++  + ++
Sbjct:   14 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLM 197          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV 711
            FK+VL+GD G GK+  + R    EF  +  +TIGVE    +       IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F  +  ++      + ++S   AP  ++  + ++
Sbjct:   13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLM 196          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 51/156 (32.69%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIG-VEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAIN 597
            E  +  +K+ LIGD GVGK+  ++R     F     +T+G V      L  +G  IK  +WDTAGQE+   +   YY GA GA+  +DVT   T +N++RW+KE +    +   I++  NK D+K+ + ++ +      + +   + E SA  A N
Sbjct:    2 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 157          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 65/206 (31.55%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI-KEGQTIVVGGASKA---NTKKPCC 753
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + ++       + DTAGQE Y A+   Y R   G LLVY +T  ++FE VS + +++    D +   ++++ NK DL++ R V   + +  A+R     IETSA + +NV++AF  ++    R I +    SG P   N   + Q   VGG +     +  K CC
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAFIAVV----RAIRRYQKESGPPQAVNAPAKSQMSAVGGRAAEKDDHVDKGCC 210          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASN_PONAB (GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 61/175 (34.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   DS ++ ++++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI +   KK  SS +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGLLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDD 176          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASM_HUMAN1.308e-1934.50Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RASK_CYPCA1.308e-1935.29GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RAS1_PHYPO1.308e-1934.57Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
LET60_CAEEL1.308e-1935.80Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
GSP2_YEAST1.308e-1930.48GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST1.308e-1930.48GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
GSP1_ENCCU1.308e-1932.69GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RAS_CRYNE1.708e-1931.55Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RASN_PONAB1.708e-1934.86GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1[more]
RASK_MELGA1.708e-1935.29GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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