FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 61/178 (34.27%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V T  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLP-ARTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 54/161 (33.54%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            + E    FK+VL+GD G GK+  + R    EF  +  +T+GVE            IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A      +  ++ L + + SA    N EK F
Sbjct:    3 ENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 51/176 (28.98%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  121 RRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +R +       KV+ +G++ VGKS ++ R+    F  +  +TIG+++    +QV  R IK  I+D AG   +  + + +Y+   G +LVYDV +  +F+ +  WL E++          NIV ++  NK D    R +   + + +AE +G  + ETSA     + + FQT    I
Sbjct:    7 KRKEPAKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSI 182          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASN_PIG (GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 61/175 (34.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   DS ++ ++++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI +   KK  SS +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDD 176          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 61/175 (34.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   DS ++ ++++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI +   KK  SS +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDD 176          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 61/175 (34.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +++ + ++++   DS ++ ++++GNK DL   R V T+ A   A+  G+ FIETSA     VE AF T++ EI +   KK  SS +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDD 176          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKYDLP-TRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 657
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK DL   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-TRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMS 171          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A      +  ++ L + + SA    N EK F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 54/161 (33.54%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            + E    FK+VL+GD G GK+  + R    EF  +  +T+GVE            IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A      +  ++ L + + SA    N EK F
Sbjct:    3 ENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPF 160          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_CHICK1.708e-1934.27GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAN_DANRE1.708e-1933.54GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
DJC27_MOUSE1.708e-1928.98DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]
RASN_PIG2.231e-1934.86GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1[more]
RASN_MONDO2.231e-1934.86GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]
RASN_HUMAN2.231e-1934.86GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RASK_RIVMA2.231e-1935.29GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RASK_ORYLA2.231e-1935.29GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RAN_SALSA2.231e-1934.42GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU2.231e-1933.54GTP-binding nuclear protein Ran OS=Carassius aurat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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