FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.107e-18
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK+VL+GD G GK+  + R    EF     +T+GVE        +   I+  +WDTAGQE++  +   YY      ++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 59/178 (33.15%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +I+TSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGAKGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIKTSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROYA (Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROSI (Ras-like protein 1 OS=Drosophila simulans GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWN-VKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWN-VKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROME (Ras-like protein 1 OS=Drosophila melanogaster GN=Ras85D PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROMA (Ras-like protein 1 OS=Drosophila mauritiana GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROER (Ras-like protein 1 OS=Drosophila erecta GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_DROAN (Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G LLV+ V    +FE++  + ++++   D+  + ++++GNK DL     V  E A+  A++ G+ +IETSA   + V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_YARLI1.107e-1832.47GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RASH_MSVMO1.446e-1833.15GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]
RAS1_DROYA1.446e-1834.57Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D ... [more]
RAS1_DROSI1.446e-1834.57Ras-like protein 1 OS=Drosophila simulans GN=Ras85... [more]
RAS1_DROPS1.446e-1834.57Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.446e-1834.57Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RAS1_DROME1.446e-1834.57Ras-like protein 1 OS=Drosophila melanogaster GN=R... [more]
RAS1_DROMA1.446e-1834.57Ras-like protein 1 OS=Drosophila mauritiana GN=Ras... [more]
RAS1_DROER1.446e-1834.57Ras-like protein 1 OS=Drosophila erecta GN=Ras85D ... [more]
RAS1_DROAN1.446e-1834.57Ras-like protein 1 OS=Drosophila ananassae GN=Ras8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
back to top