FC929743

Overview
NameFC929743
Unique NameFC929743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929743_ssr97 microsatellite FC929743_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 55/168 (32.74%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 651
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  +   ++ + +   + DTAGQE Y A+   Y R   G LLVY +    +F+ ++ +  ++    DS N+ ++++GNK DL+  R V+ ED  + A      F+ETSA + INVE+AF  ++  I +  +K
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNINQYNAK 171          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 64/229 (27.95%), Postives = 111/229 (48.47%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKE---------------------GQTIVVGGASKANTKKPCCSSS 762
            +KVV++G SG GK++L  RF   +F      TI   +       +G  I  +I DT+G ERY A+   Y R A   +LVY +T   +    EN+  ++ +++D   S I ++++GNK DL+  R V  E+ ++  ++ G+  F+ETSA   +N++ A+  +     +++SK+S  +G     + K+                       ++ V G S  +    C SSS
Sbjct:    4 YKVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNIQSAYDCL---TLQLMSKQSFLNGSSNGKDKKDKKEKKTHKKDSGSNNSSINSSSSSLSVSGGSNLSISSSCSSSS 229          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            I+  +WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L      NI I++ GNK D+K  +  A     ++  ++ L + + SA    N EK F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLA-RVCENIPIVLCGNKVDVKDRKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 681
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T      DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++++GNK DL   R V +  AQ  A   G+ +IETSA     VE AF T++ EI +   +K     E  P
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP 179          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK++L+GD G GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W K++    D NI I++ GNK D+K+ +  A     ++  ++ L + E SA    N EK F
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKA--KMVTFHRKKNLQYYEISAKSNYNFEKPF 168          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 612
            FK++L+GD G GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W K++    D NI I++ GNK D+K+ +  A     ++  ++ L + E SA    N EK F
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKA--KMVTFHRKKNLQYYEISAKSNYNFEKPF 168          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 63/209 (30.14%), Postives = 108/209 (51.67%), Query Frame = 1
Query:  148 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM----MIGNKTDLKHLRAVATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASKANTKKPCC 753
            + KVV+IG+  VGK+++L R+    F +  K TIGV+F    + V    +  Q+WDT+GQER+R++  +YYRGA   +LV+DVT   T  ++  W  +  +  +    I+    ++GNK D  + R V  + A  + +      L++ +TSA + IN+E+ F+ I ++             +P  + I   Q I +    K + +  CC
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRF-VTLKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPN-RVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQ----------CENQPQSNEIPPEQLISL--TEKKSNQSSCC 197          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.467e-18
Identity = 53/164 (32.32%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 639
            +K+V++GD GVGKS L  +  ++ F  E   TI   +  +  +++G      + DTAGQE Y A+   Y R   G LLVY++T  ++F+ +S + ++ LR        ++++ NK DL+  R V+  + +  A+     ++ETSA   +NVE+AF +++  I R
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRR 171          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.467e-18
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +F +V  + ++++   DS ++ ++++GN  DL   R V T+ AQ  A   G+ F+ETSA     VE AF T++ EI R    K L+S E
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDL--ARTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREI-RHYRMKKLNSRE 174          
BLAST of FC929743 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.467e-18
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1
Query:  151 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK 693
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++++GNK  L   R V T+ AQ  A   G+ FIETSA     V+ AF T++ EI +   K S    +   S  K
Sbjct:    4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCALPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKSKTK 183          
The following BLAST results are available for this feature:
BLAST of FC929743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_CANAL1.446e-1832.74Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RAPC_DICDI1.446e-1827.95Ras-related protein rapC OS=Dictyostelium discoide... [more]
RAN_CAEEL1.446e-1833.12GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RASH_MOUSE1.889e-1833.15GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAN3_ORYSJ1.889e-1833.77GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI1.889e-1833.77GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAB7B_DICDI1.889e-1830.14Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAS_SCHPO2.467e-1832.32Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RASN_DANRE2.467e-1835.43GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RASK_XENLA2.467e-1833.52GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929743 ID=FC929743; Name=FC929743; organism=Citrus clementina; type=EST; length=824bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAAAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGGTTATCTCAATTTCC
TCCCTTTTTGTCGTGGCGGGCTTC
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