FC929754

Overview
NameFC929754
Unique NameFC929754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.498e-14
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ + V F  Y + G LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   ++  G   N+ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTYIWVLF--YYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLNLSDLRAEKLVMFQRRYY 218          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.498e-14
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  326 VVLAMHLLALFA----PFCFTWSSLRVAFGL-YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +++ +HL  L+     P C  ++ L   FG+ Y +T  LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   74 LMVLLHLGGLYGIILVPSCKLYTCL---FGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 214          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 46/139 (33.09%), Postives = 66/139 (47.48%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L V F  Y V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   +   G   ++ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYY 218          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD2_MOUSE (Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   81 LHLGALYGITLVPSCKLYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 217          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD2_RAT (Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.360e-14
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +H+ AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   81 LHIGALYGITLVPSCKVYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 217          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  335 AMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKD--SVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            A  L  L+A FCF  ++L             G+T   HR  SHRS+K    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF +    V+E+ G   +V DL   P  RF R  Y
Sbjct:   75 AQPLTLLWAYFCFLLTAL-------------GVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRFQRKYY 197          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L  AF  Y+++ + G+T   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   ++  GG  N+ DL+ +    F R  Y
Sbjct:   71 LHLGALYGIILIPTCKIYTLLW-AFAYYLLSAV-GVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGLLNMSDLKAEKLVMFQRRYY 207          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L V F  Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   +   G   ++ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYY 218          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACO11_TRINI (Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  341 HLLALFAPF-CFT---WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRF 724
            HL AL+  + CFT   W +L  +F L+ ++ + GIT   HR  +H++FK    LE +       + Q   I W   HR HH++ D++ DPH+   GF++SH+ WL   K   + + G   ++ D+   P  +F
Sbjct:   48 HLAALYGLYLCFTSAKWETLLFSFVLFHMSNI-GITAGAHRLWTHKTFKAKLPLEIVLMIFNSLAFQNTAITWAREHRLHHKYSDTDADPHNASRGFFYSHVGWLLVKKHPDVLKYGKTIDMSDVYNNPVLKF 179          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_HUMAN (Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 46/139 (33.09%), Postives = 65/139 (46.76%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L   F  Y     LGIT   HR  SHRS+K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  G   ++ DLE +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKFYTWLWGVF--YYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYY 218          
The following BLAST results are available for this feature:
BLAST of FC929754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACOD_BOVIN1.498e-1433.09Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]
ACOD1_MOUSE1.498e-1431.94Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_SHEEP3.338e-1433.09Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
ACOD2_MOUSE3.338e-1433.09Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2... [more]
ACOD2_RAT4.360e-1432.37Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2... [more]
SCD5_BOVIN5.694e-1434.31Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
ACOD_PIG5.694e-1432.37Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACOD_CAPHI7.437e-1432.37Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]
ACO11_TRINI9.712e-1432.33Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni G... [more]
ACOD_HUMAN1.268e-1333.09Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929754 ID=FC929754; Name=FC929754; organism=Citrus clementina; type=EST; length=780bp
AAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAAACCG
ATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAGTAAAA
ACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCACTAGC
AATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAGCCAG
AGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAATTTTGTTATCT
GATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATTGGAA
CTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTTG
CTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGCTTTT
GGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTCACAG
AAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTACTTGT
TTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTGGGTA
AGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAAAGGGATCCGCA
TAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTGGCTGTTTGATA
AGGATTCTGTTCTCGAAAGGTGTGGAGGGCCAAACAATGTGGGAGATTTA
GAGAAGCAGCCTTTCTATAGATTCTTAAGAAGCACTTACATTCTCCATCC
AATTGCACTTGGAGGCTTGCTATATGCACT
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