FC929754

Overview
NameFC929754
Unique NameFC929754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:62..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: SCD5_HUMAN (Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 46/152 (30.26%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  290 RNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKD--SVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            RN   + +   G V ++ L+    P    W     A+  +++  L G+T   HR  SHRS++    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF +    V+E+ G   +V DL   P  R  R  Y
Sbjct:   48 RNVVLMSLLHLGAVYSLVLIPKAKPLTLLW-----AYFCFLLAAL-GVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRIQRKYY 192          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD1_RAT (Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 37/112 (33.04%), Postives = 55/112 (49.11%), Query Frame = 2
Query:  407 YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:  106 YYLISALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 217          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_CYPCA (Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  338 MHLLALFAPFCF------TWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDK--DSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+  F F      TW    + F   ++   LGIT   HR  SHRS+K    L+   A     + Q +  +W   HR HH++ +++ DPH+ + GF+FSH+ WL  +    V+E+ G    + DL+      F R  Y
Sbjct:   49 LHLGALYGLFLFPSARALTW----IWFFGCLLFSALGITAGAHRLWSHRSYKASLPLQIFLALGNSMAFQNDIYEWSRDHRVHHKYSETDADPHNAVRGFFFSHVGWLLVRKHPDVIEK-GRKLELSDLKADKVVMFQRRFY 185          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACOD_MESAU (Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = 2
Query:  404 LYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +Y V  + GI    HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH    GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:  101 VYYVISIEGIGAGVHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETYADPHDSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 213          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACO1_YEAST (Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae GN=OLE1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 2
Query:  407 YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYIL 745
            Y   G + IT  +HR  SHRS+     L   +A  G  S++G+   W  +HR HH++ D+ RDP+    G W+SHM W+  K +   +     ++ D+      RF    YIL
Sbjct:  148 YYAVGGVSITAGYHRLWSHRSYSAHWPLRLFYAIFGCASVEGSAKWWGHSHRIHHRYTDTLRDPYDARRGLWYSHMGWMLLKPNPKYKARA--DITDMTDDWTIRFQHRHYIL 258          
The following BLAST results are available for this feature:
BLAST of FC929754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SCD5_HUMAN4.820e-1330.26Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 ... [more]
ACOD1_RAT6.295e-1333.04Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1... [more]
ACOD_CYPCA8.222e-1332.39Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2[more]
ACOD_MESAU6.960e-1231.86Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD... [more]
ACO1_YEAST9.091e-1232.74Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929754 ID=FC929754; Name=FC929754; organism=Citrus clementina; type=EST; length=780bp
AAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAAACCG
ATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAGTAAAA
ACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCACTAGC
AATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAGCCAG
AGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAATTTTGTTATCT
GATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATTGGAA
CTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTTG
CTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGCTTTT
GGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTCACAG
AAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTACTTGT
TTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTGGGTA
AGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAAAGGGATCCGCA
TAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTGGCTGTTTGATA
AGGATTCTGTTCTCGAAAGGTGTGGAGGGCCAAACAATGTGGGAGATTTA
GAGAAGCAGCCTTTCTATAGATTCTTAAGAAGCACTTACATTCTCCATCC
AATTGCACTTGGAGGCTTGCTATATGCACT
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