FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.512e-43
Identity = 84/121 (69.42%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL+  NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.746e-43
Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWEPA 378
            AQIW+TA QE+Y AIT+AYYRGA GALL YD+TK  TF+NV RWL+ELRDH DS IVI++ GNK+DLKHLRAV+ +D  +  ++EGLSF+E SALEA+NV+KAFQTIL++IY IISKK+L++ E A
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAA 188          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.725e-42
Identity = 80/122 (65.57%), Postives = 106/122 (86.89%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GAL++YD+TK ++F+NV RWLKELR+HADS IVIM++GNKTDL HLRAV+TE+A ++A    LSF+E SA++A NVE+AFQT+L+EI+RI+S +SL +
Sbjct:   61 AQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEA 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 81/126 (64.29%), Postives = 109/126 (86.51%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWEPA 378
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  +F+NV RWL+ELRDHADS IVIMM+GNK+DL HLRAV+ ++  + AE+EGL F+E SA+EA+NVE+AFQTI++E+Y I+++K+L++ E A
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAA 188          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 80/121 (66.12%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+  LSF+E SAL++ NVE+AF+ IL+EIYRI+S+K ++
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 80/121 (66.12%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+  LSF+E SAL++ NVE+AF+ IL+EIYRI+S+K ++
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 80/121 (66.12%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+  LSF+E SAL++ NVE+AF+ IL+EIYRI+S+K ++
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RB11A_HUMAN6.788e-4469.42Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK6.788e-4469.42Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA6.788e-4469.42Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN1.512e-4369.42Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RB11A_TOBAC5.746e-4367.46Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPT3_SCHPO3.725e-4265.57GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RGP2_ORYSJ4.865e-4264.29Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11B_RAT4.865e-4266.12Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE4.865e-4266.12Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN4.865e-4266.12Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
back to top