FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            QIW+TA QE++  IT AYYRGA G +L+YD+T   +F+N+  W++ + +HA + +  M++GNK D+   R V+ E     A   G+ F+E SA   INVE AF T+  +I   + KK
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            QIW+TA QE++  IT AYYRGA G +L+YD+T   +F+N+  W++ + +HA + +  M++GNK D+   R V+ E     A   G+ F+E SA   INVE AF T+  +I   + KK
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            QIW+TA QE++  IT AYYRGA G +L+YD+T   +F+N+  W++ + +HA + +  M++GNK D+   R V+ E     A   G+ F+E SA   INVE AF T+  +I   + KK
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            QIW+TA QE++  IT AYYRGA G +L+YD+T   +F+N+  W++ + +HA + +  M++GNK D+   R V+ E     A   G+ F+E SA   INVE AF T+  +I   + KK
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            QIW+TA QE++  IT AYYRGA G +L+YD+T   +F+N+  W++ + +HA + +  M++GNK D+   R V+ E     A   G+ F+E SA   INVE AF T+  +I   + KK
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 51/111 (45.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAER-EGLSFVEASALEAINVEKAFQTILSEI 333
            QIW+TA QE++  IT +YYR A GA+L YD+TK ++F +V  W++++R +A S IV ++IGNK+DL  LR V+  +A S AE  + L  +E SA ++ NVE+AF  + +E+
Sbjct:   39 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 149          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            QIW+TA QE++  IT AYYRGA G LL+YDVT   +F N+  W++ +  HA   +  M+IGNK D+   + V +    S A+  G+ F+E SA  +INVE+AF ++  +I
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDI 176          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 51/111 (45.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAER-EGLSFVEASALEAINVEKAFQTILSEI 333
            QIW+TA QE++  IT +YYR A GA+L YD+TK ++F +V  W++++R +A S IV ++IGNK+DL  LR V+  +A S AE  + L  +E SA ++ NVE+AF  + +E+
Sbjct:   70 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    7 IWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            IW+TA QE++ ++   YYRG+  A+++YD+TK  +F  + +W+KEL++H    IV+ + GNK DL  +R V  +DA  YAE  G   VE SA  AIN+E+ FQ I  +I
Sbjct:   58 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWE 372
            QIW+TA QE++  IT++YYRGA G +++YDVT   ++ NV +WL+E+  +A   +  +++GNK+DL   + V    A  +A+  G+ F+E SA  A NVE+AF T+ +EI + +   + S  E
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RAB8A_PONAB2.775e-2141.88Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE2.775e-2141.88Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA2.775e-2141.88Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.775e-2141.88Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA2.775e-2141.88Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RB43L_HUMAN3.624e-2145.95Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RAB8A_DICDI3.624e-2143.64Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB43_HUMAN3.624e-2145.95Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB31_HUMAN3.624e-2144.04Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB1B_PONAB3.624e-2139.84Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
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