FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 80/121 (66.12%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHAD+ IVIM++GNK+DL+HLRAV T++A ++AE+  LSF+E SAL++ NVE+AF+ IL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 4.865e-42
Identity = 80/121 (66.12%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+  LSF+E SAL++ NVE+AF+ IL+EIYRI+S+K ++
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.153e-41
Identity = 78/120 (65.00%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            AQIW+TA QE+Y AIT+AYYRGA GAL++YD+T+  TFENV RWLKELRDH D  IVIM++GNK DL+HLRAV+TEDA ++AERE   F+E SALE++NVE AF  +L+EIY+++ +K+L
Sbjct:   65 AQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKAL 184          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.118e-41
Identity = 81/122 (66.39%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  TFEN +RWLKELRDH D  IV+M+IGNK+DL+HL AV TED  S+AERE L F+E SALEA NVE AF  +L++IYRI+SK+++ +
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEA 185          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.174e-41
Identity = 81/122 (66.39%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  T+ENV+RWLKELRDH D  IV+M+IGNK+DL+HL AV+T++A   AEREGL F+E SALEA NVE AF   L++IYRI+SKK++ +
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEA 185          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.198e-40
Identity = 79/126 (62.70%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWEPA 378
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+ +TFENV RWLKELRDH D  IV+M++GNK+DL+HL AV T++  ++AERE L F+E SALE+ NVE AF  +L++IYRI+SK+S+ + + A
Sbjct:   65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDA 190          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.198e-40
Identity = 81/124 (65.32%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWE 372
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+  TFENV RWLKEL++H D  IV+M++GNK+DL+HL AV TED  SYAE+E L F+E SALEA NVE AF  +L++IYRI SKK + + E
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGE 187          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.486e-40
Identity = 78/122 (63.93%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+ TTFE   RWLKELRDH D  IV+M+IGNK+DL+HL  V+TED  ++AE+E L F+E SALEA NVE AF  +L++IYRI+SK+++ +
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEA 185          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.325e-39
Identity = 79/120 (65.83%), Postives = 100/120 (83.33%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            AQIW+TA QE+Y A+T+AYYRGA GA+L+YD+TK  +F++V+RWL+ELR HAD  IVIM+IGNK+DL  LR V TEDA  +AERE L F+E SALE+ NVE AF T+L+EIYRI+SKK+L
Sbjct:   69 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL 188          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.325e-39
Identity = 78/122 (63.93%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVT+ +TFENV  WLKELR+H D  IV+M++GNK+DL+HL AV TEDA S+AE+E L F+E SALEA NVE AF  +L++I+ I+SKK++ +
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEA 185          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RB11B_DISOM4.865e-4266.12Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN4.865e-4266.12Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11B_TOBAC3.153e-4165.00Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11D_LOTJA4.118e-4166.39Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
YPT3_NICPL9.174e-4166.39Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RIC2_ORYSJ1.198e-4062.70Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH1.198e-4065.32Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11E_LOTJA3.486e-4063.93Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RGP1_ORYSJ1.325e-3965.83Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH1.325e-3963.93Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
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