FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 40/110 (36.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    7 IWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDH-ADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            IW+TA QE++  +T +YYRGA+G + +YDVT  ++FE +  W+ E+  +  +  ++ MM+ NK D+ + R V  E+ L +A+R    F+EASA     V+  F+ ++ +I
Sbjct:   64 IWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVIKMMVANKIDMPN-RTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKI 172          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB40A_HUMAN (Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.742e-15
Identity = 41/122 (33.61%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSW 369
            ++W+T+ Q ++  I  +Y RGA+G +L+YD+    +FE + RW+K++ +HA   +  +++GN+  L   R V  E A +YAER G++F E S L   N+ ++F    +E+ RI+  +   +W
Sbjct:   66 KLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-VPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIVLLRHRMNW 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.742e-15
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHA----DSYIVIMMIGNKTDLKHLRAVATEDALSYAEREG-LSFVEASALEAINVEKAFQTI 321
            QIW+TA QE++ ++  A+YRGA   +L YDV    TFEN+  W  E    A          +++GNK DL++ R V+ + A S+ + +G + + E SA EAINVE+AFQTI
Sbjct:   60 QIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTI 170          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.742e-15
Identity = 35/110 (31.82%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            Q+W+TA QE++ ++  +Y R +  A+++YD+T   +F+  ++W+ ++R    S ++IM++GNKTDL   R V+ E+    A+   + F+E SA    NV++ F+ + + +
Sbjct:   65 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB40L_HUMAN (Ras-related protein Rab-40A-like OS=Homo sapiens GN=RAB40AL PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.275e-15
Identity = 41/122 (33.61%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSW 369
            ++W+T+ Q ++  I  +Y RGA+G +L+YD+    +FE + RW+K++ +HA   +  +++GN+  L   R V  E A +YAER G++F E S L   N+ ++F    +E+ RI+  +   +W
Sbjct:   66 KLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-VPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIVLLRHRLNW 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RASEF_DANRE (RAS and EF-hand domain-containing protein OS=Danio rerio GN=rasef PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.972e-15
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLS----FVEASALEAINVEKAFQTILSEI 333
            QIW+TA QE++ +I  +Y+R A G LLLYDVT  ++F NV  W++++R+  D  I + +IGNK DL+  R   +  +  + E+  ++    F EASA E  NV +A   +  E+
Sbjct:  519 QIWDTAGQERFRSIARSYFRKAHGVLLLYDVTSESSFLNVREWVEQIRESTDEDIPMCIIGNKVDLRAARPEGSCVSSIHGEKLAMNYNALFCEASAKEGTNVIEAVLHLAREV 632          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 35/110 (31.82%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            Q+W+TA QE++ ++  +Y R +  A+++YD+T   +F+  ++W+ ++R    S ++IM++GNKTDL   R V+ E+    A+   + F+E SA    NV++ F+ + + +
Sbjct:   65 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 35/110 (31.82%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            Q+W+TA QE++ ++  +Y R +  A+++YD+T   +F+  ++W+ ++R    S ++IM++GNKTDL   R V+ E+    A+   + F+E SA    NV++ F+ + + +
Sbjct:   65 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.881e-15
Identity = 35/110 (31.82%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            Q+W+TA QE++ ++  +Y R +  A+++YD+T   +F+  ++W+ ++R    S ++IM++GNKTDL   R V+ E+    A+   + F+E SA    NV++ F+ + + +
Sbjct:   65 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.069e-15
Identity = 37/111 (33.33%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKEL-RDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            Q+W+TA QE++ ++  +Y R +  A+++YDV+   TF N S+W++++ R+   S ++I+++GNKTDL   R V+  +     +  G+ F+E SA E  N++  F+ I + +
Sbjct:   61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAAL 171          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RAB18_CAEBR1.334e-1536.36Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RB40A_HUMAN1.742e-1533.61Ras-related protein Rab-40A OS=Homo sapiens GN=RAB... [more]
RAB7A_DICDI1.742e-1542.34Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]
RAB6A_CHICK1.742e-1531.82Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RB40L_HUMAN2.275e-1533.61Ras-related protein Rab-40A-like OS=Homo sapiens G... [more]
RASEF_DANRE2.972e-1538.60RAS and EF-hand domain-containing protein OS=Danio... [more]
RAB6A_PONAB3.881e-1531.82Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_MOUSE3.881e-1531.82Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB6A_HUMAN3.881e-1531.82Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
RBH1C_ARATH5.069e-1533.33Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
back to top