FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9263 contig Ccv1_Contig9263:302..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 38/119 (31.93%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 IWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSY-IVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            I +TA Q ++ A+   Y RG  G ++ Y VT   +F+  +++ + +     +Y I ++++GNK DL+  R V+TE+ ++ A     +F E SA     ++ AFQ ++ EI R  S  SL
Sbjct:   72 ILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDDAFQGLVREIRRKESMLSL 190          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 38/119 (31.93%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 IWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSY-IVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            I +TA Q ++ A+   Y RG  G ++ Y VT   +F+  +++ + +     +Y I ++++GNK DL+  R V+TE+ ++ A     +F E SA     ++ AFQ ++ EI R  S  SL
Sbjct:   72 ILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLVREIRRKESMLSL 190          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    7 IWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKE-LRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            I +TA QE+Y A+ + Y R  +G L +Y +T  ++F+ ++ + ++ LR      + ++++GNK DL+  R V T +    A+  G  F+E SA   +NVE+AF +++ EI
Sbjct:   55 ILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREI 164          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 34/109 (31.19%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    7 IWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            IW+TA QE+   +   YY GA  A++++DVT   T++N+ +W K+L    ++ + I+++GNK D K  +  A +  +++  +  L + + SA      EK F  IL ++
Sbjct:   64 IWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICEN-VPIVLVGNKVDSKDSKVKARQ--ITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKL 169          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 37/112 (33.04%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRW----LKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILS 327
            QIW+T  QE++ ++ + +Y+G+ G +L +DVT P +FE +  W    L ++     SY ++ ++GNK DL+  R V+ E    + + + + + E SA   INV +AF+ + S
Sbjct:   60 QIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMV-VLGNKIDLED-RKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLAS 169          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RIT2_RAT9.893e-1131.93GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RIT2_MOUSE9.893e-1131.93GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RASG_DICDI9.893e-1133.64Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAN_TETPY9.893e-1131.19GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAB7B_MOUSE9.893e-1133.04Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
back to top