FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9263 contig Ccv1_Contig9263:302..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.201e-32
Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            AQIW+TA  E+Y AIT+AYYRGA GALL++D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A  +AE  GL F+E SAL++ NVE AF+T+L EI+  +SK+
Sbjct:   63 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.328e-31
Identity = 62/120 (51.67%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            AQIW+TA QE+Y AIT+AYYRGA GAL++YD++K +++EN + WL ELR++AD  + + +IGNK+DL HLRAV TE++ ++A+   L F E SAL + NV+KAF+ +++ IY+ +SK  +
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQM 183          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.271e-30
Identity = 60/117 (51.28%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            AQIW+TA QE+Y AIT+AYYRGA GAL++YD++K +++EN + WL ELR++AD  + + +IGNK+DL HLRAV T++A ++A    + F E SAL + NV+KAF+ ++  I++++SK
Sbjct:   64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 180          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.243e-29
Identity = 58/118 (49.15%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKK 354
            AQ W+TA QE++ A+T+ YYRGA GA+++YD+T   +F+NV+RWL ELR+ A+  I+IMM+GNK+DL+  R V T++A ++AE   +SF+E SAL + NV ++F+ +L++IY ++S K
Sbjct:   61 AQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.591e-27
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRII 345
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA+  + IM+IGNK DL H RAV TE+   +A+  GL F+E SA  A NVE+AF     EIY+ I
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.591e-27
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRII 345
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA+  + IM+IGNK DL H RAV TE+   +A+  GL F+E SA  A NVE+AF     EIY+ I
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.286e-26
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRII 345
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA++ + IM++GNK DL H RAV+ E+   +A+  GL F+EASA  A NVE+AF      IY+ I
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.286e-26
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRII 345
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R HA++ + IM++GNK DL H RAV+ E+   +A+  GL F+EASA  A NVE+AF      IY+ I
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.680e-26
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H+ S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIYR I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.742e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H+ S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+A+     EIYR I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RAB25_BOVIN1.201e-3257.63Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
YPT31_YEAST1.328e-3151.67GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPT32_YEAST3.271e-3051.28GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RB11C_DICDI1.243e-2949.15Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
YPTV4_VOLCA2.591e-2751.75GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE2.591e-2751.75GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_MAIZE1.286e-2650.00Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2A_MAIZE1.286e-2650.00Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_HUMAN1.680e-2650.00Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2B_MOUSE3.742e-2649.14Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
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