FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9263 contig Ccv1_Contig9263:302..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/114 (50.00%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRII 345
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY+ I
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKI 171          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.887e-26
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRGA GALL+YD+T+  TF +++ WL++ R H++S +VIM+IGNK+DL+  R V  E+  ++A   GL F+E SA  A NVE+AF     EIY  I +
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.383e-26
Identity = 56/116 (48.28%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            QIW+TA QE + +IT +YYRG+ GALL+YD+T+  TF +++ WLK+ R +A+S + I++IGNK+D++  RAV+ E+   +A+  GL F+E SA  A NVE+AF    S+IY  I K
Sbjct:   57 QIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQK 172          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RAB2_LYMST4.887e-2650.00Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RAT4.887e-2649.14Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT4.887e-2649.14Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB4.887e-2649.14Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE4.887e-2649.14Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA4.887e-2649.14Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN4.887e-2649.14Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK4.887e-2649.14Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA4.887e-2649.14Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_DICDI6.383e-2648.28Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
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