FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9263 contig Ccv1_Contig9263:302..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  E+A  +AE  GL F+EASA    NVE AF     +IY+ I   SL
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  E+A  +AE  GL F+EASA    NVE AF     +IY+ I   SL
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  E+A  +AE  GL F+EASA    NVE AF     +IY+ I   SL
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  E+A  +AE  GL F+EASA    NVE AF     +IY+ I   SL
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  E+A  +AE  GL F+EASA    NVE AF     +IY+ I   SL
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSL 360
            QIW+TA QE++ A+T +YYRGA GAL++YD+T+ +T+ ++S WL + R+  +   VI++IGNK DL+  R V  E+A  +AE  GL F+EASA    NVE AF     +IY+ I   SL
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.019e-23
Identity = 50/116 (43.10%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISK 351
            Q+W+TA QE+Y +IT +YY+GA GAL++Y++    +F N+ +WLK+ R++A     IM++GNK+DLK  R V+T +   +AE+  + F+E SAL++ NVE AF  + + IY  + K
Sbjct:   63 QLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFK 178          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.058e-23
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEI 333
            QIW+TA QE++ ++T+AYYR A   LLLYDVT   +F+++  WL E+++HA   +V+M++GNK D    RAV  EDA   A+  GL F+E SA   +NV+ AF  I  E+
Sbjct:  116 QIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.605e-23
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSY-IVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS---SWE 372
            QIW+TA QE++ +IT AYYR + G LLL+D+T   +F+NV  WL+E + H   Y IV +++G+K DL   R V   +A   A   G+ ++E SA +AINVEKAF  +  +IY ++ +  ++    WE
Sbjct:   61 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWE 187          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.605e-23
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 QIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSY-IVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS---SWE 372
            QIW+TA QE++ +IT AYYR + G LLL+D+T   +F+NV  WL+E + H   Y IV +++G+K DL   R V   +A   A   G+ ++E SA +AINVEKAF  +  +IY ++ +  ++    WE
Sbjct:   61 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWE 187          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RAB14_RAT4.574e-2447.06Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB4.574e-2447.06Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG4.574e-2447.06Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE4.574e-2447.06Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN4.574e-2447.06Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK4.574e-2447.06Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RB11B_DICDI1.019e-2343.10Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB26_BOVIN5.058e-2346.36Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RB39B_MOUSE6.605e-2341.73Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN6.605e-2341.73Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
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