FC929757

Overview
NameFC929757
Unique NameFC929757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:11..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIL4_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 47/139 (33.81%), Postives = 66/139 (47.48%), Query Frame = 3 
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADE-NFVK-------KHTGPGILSMANAGPGTNGSQFFVCTAKT-EWLDGKHVVFGSVVEGMDVVK 788
            G +V++L+ +  PR   NF  LC          K  +Y     H V   F+ Q            ESI+G  + D+ +F +       KH   G +SM N G   +GSQF + T +  ++LDG H VFG V EGMD+VK
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVK 137
[Close]
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 46/139 (33.09%), Postives = 66/139 (47.48%), Query Frame = 3 
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADE-NFVK-------KHTGPGILSMANAGPGTNGSQFFVCTAKT-EWLDGKHVVFGSVVEGMDVVK 788
            G +V++L+ +  PR   NF  LC          K  +Y     H V   F+ Q            ESI+G  + D+ +F +       KH   G +SM N G   +GSQF + T +  ++LDG H VFG V EGMD++K
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIK 137
The following BLAST results are available for this feature:
BLAST of FC929757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPIL4_MOUSE6.056e-1133.81Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus ... [more]
PPIL4_HUMAN7.909e-1133.09Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929757 ID=FC929757; Name=FC929757; organism=Citrus clementina; type=EST; length=792bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTCGGGTCAGTCGTCGAAGGAATGGACGTCGTCAAGGCCA
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