FC929757

Overview
NameFC929757
Unique NameFC929757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.583e-51
Identity = 98/149 (65.77%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            S   NP V+ D+   GQP GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ            +SIYGS F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK
Sbjct:   40 SSSQNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVK 181          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.818e-51
Identity = 98/149 (65.77%), Postives = 107/149 (71.81%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            S   NP V+ D+   GQP GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ             SIYGS F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK
Sbjct:   40 SSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVK 181          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.021e-50
Identity = 98/151 (64.90%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  336 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            + S   NP V+ D+   GQP GR+V+EL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIP FMCQ            +SIYGS F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK
Sbjct:   40 SSSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVK 183          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.021e-50
Identity = 95/143 (66.43%), Postives = 109/143 (76.22%), Query Frame = 3
Query:  360 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            KVFFD+T+G   AGRIVMELF +VTP+TAENFRALCTGEKG+GK+GKPLH+KGS FHRVI  FM Q            ESIYG  FADENF  KH  PG+LSMANAGP TNGSQFF+      WLDGKHVVFG VVEG+++++
Sbjct:    4 KVFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILE 146          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.334e-50
Identity = 93/144 (64.58%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            PKVFFD+ V G+P+GR+  +LF+D  P+TAENFRALCTGEKG G SGKPLHYKGS FHR+IPGFM Q            ESIYG  F DENF  KHTG G+LSMANAGP TNGSQFF+   KT WLDG H VFG +VEG  V++
Sbjct:    7 PKVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLE 150          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.334e-50
Identity = 96/142 (67.61%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  360 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVV 785
            KV+FD+ + G+ AGRIVM LF    P+T ENFRALCTGEKGIGK+GK LHYKGSSFHR+IP FM Q            ESIYG  FADENF  KHTGPG LSMANAG  TNGSQFF+ T  T WLDG+HVVFG VV GMDVV
Sbjct:   36 KVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVV 177          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.068e-50
Identity = 96/147 (65.31%), Postives = 108/147 (73.47%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            M  P+VFFD+   G+  GRIVMEL ADV P+TAENFRALCTGEKG G       YKGS+FHRVIPGFMCQ            +SIYG  FADENF  KHT PGILSMANAG  TNGSQFF+CTA T WLDGKHVVFG+V +G+D++K
Sbjct:    1 MAKPQVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIK 140          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.474e-49
Identity = 95/148 (64.19%), Postives = 109/148 (73.65%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVKA 791
            M NP+V+FD+T+G +P GRIV ELF D+ P+TAENFRALCTGEKG GKSGKPL Y+GS FHR+I  FM Q            ESIYG  F DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG V++G  VV+A
Sbjct:    1 MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRA 148          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.474e-49
Identity = 100/150 (66.67%), Postives = 108/150 (72.00%), Query Frame = 3
Query:  342 SKMPN-PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            SKM   P+VFFDMT   +P GRIVMEL +DV P+TAENFRALCTGEKG G       YKGS FHRVIP FMCQ            +SIYG+ F DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KHVVFG VVEG+DVVK
Sbjct:   61 SKMSTLPRVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVK 203          
BLAST of FC929757 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.285e-49
Identity = 96/154 (62.34%), Postives = 110/154 (71.43%), Query Frame = 3
Query:  327 SPINQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGSVVEGMDVVK 788
            S  +  K    +VFFD+T+GG+ AGRIV EL+ D+ P+TAENFRALCTGEKG+GK GKPLHYKGS+FHRVI  FM Q            ESIYG+ F DENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG V+ G  VV+
Sbjct:    2 SSTDDVKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVR 155          
The following BLAST results are available for this feature:
BLAST of FC929757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPIF_RAT4.583e-5165.77Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE7.818e-5165.77Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_BOVIN1.021e-5064.90Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPI2_SYNY31.021e-5066.43Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CYP5_RHIOR1.334e-5064.58Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
CP20A_ARATH1.334e-5067.61Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIA_HEMPU5.068e-5065.31Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPID_RHIOR1.474e-4964.19Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIA_DROME1.474e-4966.67Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPID_NEUCR3.285e-4962.3441 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929757 ID=FC929757; Name=FC929757; organism=Citrus clementina; type=EST; length=792bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTCGGGTCAGTCGTCGAAGGAATGGACGTCGTCAAGGCCA
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