FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BORPD (NADH-quinone oxidoreductase subunit B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoB PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.545e-56
Identity = 99/140 (70.71%), Postives = 116/140 (82.86%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDUS7_DICDI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Dictyostelium discoideum GN=ndufs7 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.545e-56
Identity = 102/150 (68.00%), Postives = 121/150 (80.67%), Query Frame = 1
Query:  313 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            E VISK+D +VN+ R GS+WPM+FGLACCAVEMM   AARYD+DRFG+I R SPRQSD ++VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRI+PVD+Y+PGCPPTAEA +YGILQLQKK+ R ++L  W
Sbjct:   26 EVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNLLTW 175          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BORA1 (NADH-quinone oxidoreductase subunit B OS=Bordetella avium (strain 197N) GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.635e-56
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:   11 FITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_RICM5 (NADH-quinone oxidoreductase subunit B OS=Rickettsia massiliae (strain Mtu5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 97/148 (65.54%), Postives = 120/148 (81.08%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 759
            F+++K+D+V+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:   21 FLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMF (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 97/142 (68.31%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGCPPTAEAL+YG++QLQ+K+ R
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMB (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup B GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 97/142 (68.31%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGCPPTAEAL+YG++QLQ+K+ R
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_NEIG2 (NADH-quinone oxidoreductase subunit B OS=Neisseria gonorrhoeae (strain NCCP11945) GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 97/142 (68.31%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGCPPTAEAL+YG++QLQ+K+ R
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BORPE (NADH-quinone oxidoreductase subunit B OS=Bordetella pertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BORPA (NADH-quinone oxidoreductase subunit B OS=Bordetella parapertussis GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BORBR (NADH-quinone oxidoreductase subunit B OS=Bordetella bronchiseptica GN=nuoB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.495e-56
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKM PALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG+LQ+Q K+
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKI 150          
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_BORPD1.545e-5670.71NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NDUS7_DICDI1.545e-5668.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_BORA12.635e-5670.00NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_RICM54.495e-5665.54NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_NEIMF4.495e-5668.31NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_NEIMB4.495e-5668.31NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_NEIG24.495e-5668.31NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_BORPE4.495e-5670.00NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORPA4.495e-5670.00NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_BORBR4.495e-5670.00NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
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