FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB1_CHRVO (NADH-quinone oxidoreductase subunit B 1 OS=Chromobacterium violaceum GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.264e-58
Identity = 104/142 (73.24%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_POLSQ (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQSKIAR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_POLNS (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter necessarius (strain STIR1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQSKIAR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPL (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Lens) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPH (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPC (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Corby) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPA (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Paris) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_DECAR (NADH-quinone oxidoreductase subunit B OS=Dechloromonas aromatica (strain RCB) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++NY+R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQNKIRR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_VARPS (NADH-quinone oxidoreductase subunit B OS=Variovorax paradoxus (strain S110) GN=nuoB PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.156e-58
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:   11 FVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQQKIRR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDUS7_CAEEL (Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Caenorhabditis elegans GN=W10D5.2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.156e-58
Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 1
Query:  301 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            S  AE+ +++LDDV+N  +RGSIWP++FGLACCAVEMMH  A RYD+DR+G++FR SPRQ+D++ VAGT+TNKMAPALR++YDQMP+ +WVISMGSCAN              CDR++PVDIYVPGCPPTAEALLYG+LQLQKK+ R+R+   W
Sbjct:   43 SSKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQLW 196          
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_CHRVO1.264e-5873.24NADH-quinone oxidoreductase subunit B 1 OS=Chromob... [more]
NUOB_POLSQ1.651e-5872.54NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_POLNS1.651e-5872.54NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_LEGPL1.651e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPH1.651e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPC1.651e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPA1.651e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_DECAR1.651e-5872.54NADH-quinone oxidoreductase subunit B OS=Dechlorom... [more]
NUOB_VARPS2.156e-5871.83NADH-quinone oxidoreductase subunit B OS=Variovora... [more]
NDUS7_CAEEL2.156e-5864.29Probable NADH dehydrogenase [ubiquinone] iron-sulf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
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