FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_THEFY (NADH-quinone oxidoreductase subunit B OS=Thermobifida fusca (strain YX) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 68/144 (47.22%), Postives = 98/144 (68.06%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGII-FRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 747
            +++ ++ +V ++R+ S+WP +FGLACCA+EMM  G  R+D+ RFG+  F  +PRQ+D+M+VAG ++ KMAP LR +YDQM +P+WVI+MG CA+               D IVPVDIY+PGCPP  E LL  IL+L  K+   +
Sbjct:   12 LLTTVEQIVGFVRKTSMWPATFGLACCAIEMMAAGGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRTIYDQMAEPKWVIAMGVCAS-SGGMFNNYAIVQGVDHIVPVDIYLPGCPPRPEMLLDAILKLHDKVQNTK 154
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SHIDS (NADH-quinone oxidoreductase subunit B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIAKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALTY (NADH-quinone oxidoreductase subunit B OS=Salmonella typhimurium GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALTI (NADH-quinone oxidoreductase subunit B OS=Salmonella typhi GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALSV (NADH-quinone oxidoreductase subunit B OS=Salmonella schwarzengrund (strain CVM19633) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALPK (NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi A (strain AKU_12601) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALPC (NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi C (strain RKS4594) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALPB (NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALPA (NADH-quinone oxidoreductase subunit B OS=Salmonella paratyphi A GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_SALNS (NADH-quinone oxidoreductase subunit B OS=Salmonella newport (strain SL254) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.171e-34
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1 
Query:  322 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 185
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_THEFY2.171e-3447.22NADH-quinone oxidoreductase subunit B OS=Thermobif... [more]
NUOB_SHIDS2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Shigella ... [more]
NUOB_SALTY2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALTI2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALSV2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALPK2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALPC2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALPB2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALPA2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALNS2.171e-3446.62NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
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