FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_KLEP3 (NADH-quinone oxidoreductase subunit B OS=Klebsiella pneumoniae (strain 342) GN=nuoB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 68/145 (46.90%), Postives = 97/145 (66.90%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            L D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 189
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_CITK8 (NADH-quinone oxidoreductase subunit B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=nuoB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 68/145 (46.90%), Postives = 97/145 (66.90%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            L D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 189
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_PROMA (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus GN=ndhK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_PROM4 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9211) GN=ndhK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.077e-33
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   48 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 187
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSYWF (NADH-quinone oxidoreductase subunit B OS=Psychrobacter sp. (strain PRwf-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.407e-33
Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 1 
Query:  322 ISKLDDVV----NYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 747
            + KL+D+V    N+ R+ S+WP +FG +CC VE   T  A +DL RFG  + R SPRQ+DVM+VAGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+I+PVD+YVPGCPP  EAL+ G++ LQ+ + + R
Sbjct:   37 MGKLEDMVHASANWGRKNSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESITKER 182
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB1_NITMU (NADH-quinone oxidoreductase subunit B 1 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.407e-33
Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            ++++L D+V + R+ S+WP +FGL+CC VEM  +  ++YDL RFG  + R SPRQ+D++V++GT+  KMAP L+++YDQM +PRWVISMGSCAN               DR +PVD+YVPGCPP  +A + G+  LQ  + + +    W
Sbjct:   37 LLTRLQDLVAWGRKNSVWPYNFGLSCCYVEMATSFTSKYDLARFGSEVIRASPRQADLIVISGTVFIKMAPVLQRLYDQMLEPRWVISMGSCAN-SGGMYDIYSVVQGVDRFLPVDVYVPGCPPRPDAFMQGLNLLQDAIGKEKRPLSW 184
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PROMH (NADH-quinone oxidoreductase subunit B OS=Proteus mirabilis (strain HI4320) GN=nuoB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.838e-33
Identity = 68/145 (46.90%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            L DVVN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   46 LHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGSEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 189
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_PROM3 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 65/153 (42.48%), Postives = 103/153 (67.32%), Query Frame = 1 
Query:  292 GGISKTAEF----VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            G  S T+E     +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   22 GAPSVTSELSENIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_CYAP7 (NAD(P)H-quinone oxidoreductase subunit K OS=Cyanothece sp. (strain PCC 7424) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 61/140 (43.57%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ +DD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   I++L+KK+
Sbjct:   38 ILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKV 177
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PHOLL (NADH-quinone oxidoreductase subunit B OS=Photorhabdus luminescens subsp. laumondii GN=nuoB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            L D+VN+ R+ S+WP +FGL+CC VEM  +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  +L LQ+ + + R    W
Sbjct:   46 LHDMVNWGRKNSLWPYNFGLSCCYVEMATSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERRPLSW 189
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_KLEP31.077e-3346.90NADH-quinone oxidoreductase subunit B OS=Klebsiell... [more]
NUOB_CITK81.077e-3346.90NADH-quinone oxidoreductase subunit B OS=Citrobact... [more]
NDHK_PROMA1.077e-3344.29NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM41.077e-3344.29NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NUOB_PSYWF1.407e-3348.30NADH-quinone oxidoreductase subunit B OS=Psychroba... [more]
NUOB1_NITMU1.407e-3345.64NADH-quinone oxidoreductase subunit B 1 OS=Nitroso... [more]
NUOB_PROMH1.838e-3346.90NADH-quinone oxidoreductase subunit B OS=Proteus m... [more]
NDHK_PROM32.400e-3342.48NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_CYAP72.400e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Cyanot... [more]
NUOB_PHOLL3.135e-3346.90NADH-quinone oxidoreductase subunit B OS=Photorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
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