FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK1_CYAP4 (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.347e-33
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ L+DV ++ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL K+Y+QMP+P++VI+MG+C                  D+++PVDIY+PGCPP  EA++  I++L+KK+
Sbjct:   29 ILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVPRCSPRQADLLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRGVDKLIPVDIYLPGCPPRPEAIMDAIVKLRKKI 168          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPW (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain W619) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPK (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain KT2440) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPG (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain GB-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPF (NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf0-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   39 MGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 189          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEP1 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEF5 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   39 MGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 189          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEE4 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas entomophila (strain L48) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEAE (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEAB (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190          
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK1_CYAP45.347e-3344.29NAD(P)H-quinone oxidoreductase subunit K 1 OS=Cyan... [more]
NUOB_PSEPW6.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPK6.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPG6.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPF6.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEP16.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEF56.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEE46.984e-3346.71NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEAE6.984e-3346.05NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEAB6.984e-3346.05NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
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