FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEA8 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain LESB58) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1 
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_PSEA7 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain PA7) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1 
Query:  322 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R    W
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERRPLSW 190
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_ERWT9 (NADH-quinone oxidoreductase subunit B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            L D+VN+ R+ S+WP +FGL+CC VEM  +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  +L LQ+ + + R    W
Sbjct:   46 LHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERRPLSW 189
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BDEBA (NADH-quinone oxidoreductase subunit B OS=Bdellovibrio bacteriovorus GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:  325 SKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQK 729
            SKLD +V + R+ S+WPM +G ACC +E M     +YDL RFG  + R SPRQ+D++VVAGT+T KMAP + ++Y QM +P++V+SMG+CA+               D+++PVD+Y+PGCPPT EA++ GI+ LQ+
Sbjct:   32 SKLDAIVAWGRKNSLWPMPYGTACCGIEFMSVMGPKYDLARFGAEVARFSPRQADLLVVAGTITEKMAPVIVRIYQQMLEPKYVLSMGACAS-SGGFYRAYHVLQGVDKVIPVDVYIPGCPPTPEAVMDGIMALQR 166
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_ANAVT (NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhK PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 61/140 (43.57%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ +DD+ N+ R  S+WP+ FG ACC +E      +R+D DRFG+I R SPRQ+D+++ AGT+T KMAP L ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA++  I++L+KK+
Sbjct:   33 ILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_ANASP (NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena sp. (strain PCC 7120) GN=ndhK PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 61/140 (43.57%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ +DD+ N+ R  S+WP+ FG ACC +E      +R+D DRFG+I R SPRQ+D+++ AGT+T KMAP L ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA++  I++L+KK+
Sbjct:   33 ILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKI 172
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK1_GLOVI (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloeobacter violaceus GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 62/144 (43.06%), Postives = 97/144 (67.36%), Query Frame = 1 
Query:  307 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            T   V++ L+D+ N+ R  S+WP+ +G +CC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL  +Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   I++L+KKM
Sbjct:   20 TNNVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRFGLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKM 163
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_ENTS8 (NADH-quinone oxidoreductase subunit B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 67/145 (46.21%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  331 LDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            L D+VN+ R+ S+WP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R    W
Sbjct:   46 LHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSW 189
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_BUCAP (NADH-quinone oxidoreductase subunit B OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 69/149 (46.31%), Postives = 96/149 (64.43%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            V   L  +VN+ R+ S+WP +FGL+CC VEM+    + +D+ RFG  + R SPRQ+DVMV+AGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVDIY+PGCPP  EA ++ +  LQK +N  R    W
Sbjct:   41 VTKLLHKIVNWGRKNSLWPYNFGLSCCYVEMVTAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHALTLLQKTINEERRPLSW 188
[Close]
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDHK_SYNS3 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain CC9311) GN=ndhK PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 60/140 (42.86%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KM PAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   43 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 182
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_PSEA86.984e-3346.05NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEA76.984e-3346.05NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_ERWT96.984e-3346.90NADH-quinone oxidoreductase subunit B OS=Erwinia t... [more]
NUOB_BDEBA6.984e-3347.79NADH-quinone oxidoreductase subunit B OS=Bdellovib... [more]
NDHK_ANAVT6.984e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Anabae... [more]
NDHK_ANASP6.984e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Anabae... [more]
NDHK1_GLOVI6.984e-3343.06NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloe... [more]
NUOB_ENTS89.121e-3346.21NADH-quinone oxidoreductase subunit B OS=Enterobac... [more]
NUOB_BUCAP9.121e-3346.31NADH-quinone oxidoreductase subunit B OS=Buchnera ... [more]
NDHK_SYNS39.121e-3342.86NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
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