FC929768

Overview
NameFC929768
Unique NameFC929768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_FRATH (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain LVS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.384e-57
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_FRATF (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.384e-57
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_FRAT1 (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.384e-57
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_FRAP2 (NADH-quinone oxidoreductase subunit B OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.113e-57
Identity = 100/143 (69.93%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRI+PVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_POLSJ (NADH-quinone oxidoreductase subunit B OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.935e-57
Identity = 100/142 (70.42%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PALRKVYDQM +PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:   11 FMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQQKIRR 152          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_LEPCP (NADH-quinone oxidoreductase subunit B OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.935e-57
Identity = 99/146 (67.81%), Postives = 119/146 (81.51%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 753
            FV + +D ++N+ + GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWV+SMGSCAN              CDR+VPVD+YVPGCPPTAEALLYGILQLQ K+ R   +
Sbjct:   11 FVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQAKIRRENTI 156          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_RICTY (NADH-quinone oxidoreductase subunit B OS=Rickettsia typhi GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.058e-57
Identity = 98/148 (66.22%), Postives = 121/148 (81.76%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 759
            F++SK+D+V+++ R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:   21 FLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NDUS7_NEUCR (NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial OS=Neurospora crassa GN=G17A4.170 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.058e-57
Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1
Query:  295 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYW 762
            G     ++ ++ LD +VN+ R+ S+WPM+FGLACCAVEMMH    RYD DR GIIFR SPRQSDVM+VAGTLTNKMAPALR+VYDQMPDPRWVISMGSCAN              CDRIVPVDIYVPGCPPT+EAL+YGI QLQ+KM   +    W
Sbjct:   68 GTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITRMW 223          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_RICRS (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoB PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.183e-56
Identity = 98/148 (66.22%), Postives = 120/148 (81.08%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 759
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of FC929768 vs. ExPASy Swiss-Prot
Match: NUOB_RICRO (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Iowa) GN=nuoB PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.183e-56
Identity = 98/148 (66.22%), Postives = 120/148 (81.08%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 759
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
The following BLAST results are available for this feature:
BLAST of FC929768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_FRATH2.384e-5770.63NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATF2.384e-5770.63NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRAT12.384e-5770.63NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRAP23.113e-5769.93NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_POLSJ6.935e-5770.42NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_LEPCP6.935e-5767.81NADH-quinone oxidoreductase subunit B OS=Leptothri... [more]
NUOB_RICTY9.058e-5766.22NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NDUS7_NEUCR9.058e-5765.38NADH-ubiquinone oxidoreductase 19.3 kDa subunit, m... [more]
NUOB_RICRS1.183e-5666.22NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICRO1.183e-5666.22NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929768 ID=FC929768; Name=FC929768; organism=Citrus clementina; type=EST; length=764bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTG
back to top