FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.259e-45
Identity = 93/206 (45.15%), Postives = 136/206 (66.02%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT ++EG+T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A   +  +++GNK+D+   + V    A+ +A+   + F+ETSA ++ NVE+AF T+  +I   +   + +S   A S++K GQ     G + + +   CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSN-AKSSVKVGQ-----GTNVSQSSSNCC 203          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.079e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.079e-44
Identity = 87/170 (51.18%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  127 PDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 633
            PDE+YD+LFK+VL+GD+ VGK+ ++ RF    F     STIGV+F  +TL+++G+ +K QIWDTAGQER+R IT +YYR A GA+L YD+TK ++F +V  W++++R +A SNIV ++IGNK+DL  LR V+  +AQS AE  + L  IETSA ++ NVE+AF  + +E+
Sbjct:   11 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.409e-44
Identity = 92/213 (43.19%), Postives = 131/213 (61.50%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL-KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 759
            R   +YDYL K++LIGDSGVGKS LL RF+   F     +TIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W++ +  HA  N+  +++GNK D+ +  RAV T   Q+ A+  G+ F ETSA   +NVE+ F +I  +I + ++             IK          ++A  K  CC S
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQ----SGNQAAAKSACCGS 215          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.409e-44
Identity = 87/171 (50.88%), Postives = 122/171 (71.35%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 651
            Y+Y+FK ++IGD GVGKS LL +FT N+F  +S  TIGVEF TR + V  + IK QIWDTAGQER+RA+T +YYRGA GALLVYD+T+  T+ +++ WL + R+  + N VIM+IGNK DL+  R V  E+A ++A++ GL F+E+SA    NVE+AF      I++ + +
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQE 175          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.840e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.840e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.840e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.840e-44
Identity = 88/183 (48.09%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+  L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +FEN+  W++ + +HA  ++  M++GNK D    R V+ E  +  A   G+ F+ETSA   IN+E AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.840e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSN 186          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_SCHPO8.259e-4545.15GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB8A_BOVIN1.079e-4448.09Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB43_HUMAN1.079e-4451.18Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RB1BV_BETVU1.409e-4443.19Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB14_DICDI1.409e-4450.88Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB8A_PONAB1.840e-4448.09Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MACFA1.840e-4448.09Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN1.840e-4448.09Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CHICK1.840e-4448.09Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8A_CANFA1.840e-4448.09Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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