FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.099e-44
Identity = 93/206 (45.15%), Postives = 130/206 (63.11%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+T+K QIWDTAGQER+R ITS+YYRGA G  +VYDVT   +F NV +WL+E+  +A   +  +++GNK+D+   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+  +I      K       A +N K    +  G     N+   CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQI------KERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44
Identity = 87/183 (47.54%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  S+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSS 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44
Identity = 87/183 (47.54%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 687
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  S+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSS 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44
Identity = 89/178 (50.00%), Postives = 125/178 (70.22%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 672
            YD LFK++LIGDSGVGKS LL RF  + +     STIGV+F  +T++++G+TIK QIWDTAGQER+  ITS+YYRGA G L+VYDVT   ++ NV +WL+E+  HA  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGE 182          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 9.132e-44
Identity = 81/186 (43.55%), Postives = 132/186 (70.97%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI-YRIISKKSLSSGEPAPSNIK 693
            YD+LFK++LIGDSGVGK+ L+ RF  + F     STIG++F  RT+++EG+ IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN+  W+K ++++A + +  +++GNK D++  R V  E A+  A    + F ETSA  ++NV++AF ++  +I  +   ++S +S +P+ +++K
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLK 190          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.132e-44
Identity = 89/205 (43.41%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T++++G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.132e-44
Identity = 89/205 (43.41%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T++++G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.132e-44
Identity = 89/205 (43.41%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T++++G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 94/207 (45.41%), Postives = 130/207 (62.80%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            + YDYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G LL+YDVT   +F+NV  W   +  HA  N+  ++IGNK D +  R V+ E  Q+ A+  G+ F+E SA   +NV++AF T+  EI     KK     E   SN  +   + +G      T K CC
Sbjct:    4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI-----KKQKIDAENEFSN--QANNVDLG---NDRTVKRCC 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 89/205 (43.41%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T++++G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D+   R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR4.099e-4445.15GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB8A_RAT6.992e-4447.54Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE6.992e-4447.54Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB1C_HUMAN6.992e-4450.00Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB13_RAT9.132e-4443.55Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB10_PONAB9.132e-4443.41Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE9.132e-4443.41Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN9.132e-4443.41Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
YPT2_SCHPO1.193e-4345.41GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB10_CANFA1.193e-4343.41Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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