FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 86/169 (50.89%), Postives = 123/169 (72.78%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 633
            DE YD+LFK+VL+GD+ VGK+ ++ RF    F     STIGV+F  +TL+++G+ +K QIWDTAGQER+R IT +YYR A GA+L YD++K +TF +V  W++++R +A SNIV ++IGNK+DL  LR V   +AQS AE  + L  IETSA ++ NVE+AF  + +E+
Sbjct:   10 DEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 81/186 (43.55%), Postives = 131/186 (70.43%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI-YRIISKKSLSSGEPAPSNIK 693
            YD+LFK++LIGDSGVGK+ L+ RF  + F     STIG++F  RT+++EG+ IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN+  W+K ++++A + +  +++GNK D++  R V  E A   A   G+ F ETSA  ++NV++AF ++  +I  +   ++S +  +P+ +++K
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLK 190          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 88/205 (42.93%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++   +T++++G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D++  R V     +  A   G+ F ETSA   IN+EKAF T+  +I R    K     EP   N+      +  G      K  CC
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK-----EPNSENVD-----ISSGGGVTGWKSKCC 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.034e-43
Identity = 86/205 (41.95%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            YD L K++LIGDSGVGKS LL RF  ++F     +TIG++F  RT+ +  + +K Q+WDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W + ++ +A+  + ++++GNK DL   R V+TE  Q+ A++ G+ F+E S+   INVE+ F ++ + I   ++K   +       NI EG         E N+   CC
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINIAEG---------EENSASKCC 203          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.034e-43
Identity = 81/182 (44.51%), Postives = 123/182 (67.58%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPS 684
            YD+LFK++LIGDSGVGK+ L+ RF  + F     STIG++F  RT+ +EG+ IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN+  W+K ++++A + +  +++GNK D++  R V  E A   A   G+ F ETSA  ++NV++AF ++  +I      +   +G   PS
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPS 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.034e-43
Identity = 81/182 (44.51%), Postives = 123/182 (67.58%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPS 684
            YD+LFK++LIGDSGVGK+ L+ RF  + F     STIG++F  RT+ +EG+ IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN+  W+K ++++A + +  +++GNK D++  R V  E A   A   G+ F ETSA  ++NV++AF ++  +I      + L +    PS
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPS 186          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.470e-43
Identity = 80/186 (43.01%), Postives = 130/186 (69.89%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI-YRIISKKSLSSGEPAPSNIK 693
            YD+LFK++LIGDSGVGK+ L+ RF  + F     STIG++F  RT+ +EG+ IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN+  W+K ++++A + +  +++GNK D++  R V  E A+  A    + F ETSA  ++NV++AF ++  +I  +   ++S ++ +P+ + +K
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLK 190          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.532e-43
Identity = 97/209 (46.41%), Postives = 132/209 (63.16%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL++I          SGE  P  +  G  I  G AS    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI---------DSGELDPERM--GSGIQYGDASLRQLRQP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.532e-43
Identity = 97/209 (46.41%), Postives = 132/209 (63.16%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL++I          SGE  P  +  G  I  G AS    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI---------DSGELDPERM--GSGIQYGDASLRQLRQP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.532e-43
Identity = 85/169 (50.30%), Postives = 122/169 (72.19%), Query Frame = 1
Query:  130 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 633
            DE YD+LFK+VL+GD+ VGK+ ++ RF    F     STIGV+F  +TL+++G+ +K QIWDTAGQER+R IT +YYR A GA+L YD++K +TF +V  W++++R +A SNIV ++IGNK+DL   R V   +AQS AE  + L  IETSA ++ NVE+AF  + +E+
Sbjct:   10 DEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB43_RAT1.558e-4350.89Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB13_MESAU1.558e-4343.55Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB10_CHICK1.558e-4342.93Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RYL1_YARLI2.034e-4341.95Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB13_HUMAN2.034e-4344.51Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN2.034e-4344.51Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_MOUSE3.470e-4343.01Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB4B_HUMAN4.532e-4346.41Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA4.532e-4346.41Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB43_MOUSE4.532e-4350.30Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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