FC929776

Overview
NameFC929776
Unique NameFC929776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929776_ssr97 microsatellite FC929776_ssr97:97..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:17..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.730e-43
Identity = 84/184 (45.65%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  124 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY-RIISKKSLSSGE 672
            R    Y++LFK +++GDS VGKSNLL +F    F   S  TIGVEF +R++ +  + IK QIWDTAGQE++R+IT AYYRGA+ A++VYD+T+  +FE+++ WL + R  +  ++  ++IGNK DL+  R V+T +A+ +AE+ GL F ETSA  A+NV++AF+    +I  ++ S   L S E
Sbjct:   16 RKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNE 199          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.730e-43
Identity = 90/206 (43.69%), Postives = 130/206 (63.11%), Query Frame = 1
Query:  139 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 756
            YD LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T+++ G+ IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+S+WL+ + +HA+ ++  M++GNK D++  R V     +  A    + F ETSA   IN+EKAF T+  +I +    K     EP   N+    T   GG +     K CCS
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVK-----EPDRENVDISTT---GGGTGL---KKCCS 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.010e-42
Identity = 84/164 (51.22%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 621
            +EYDYLFK+++IGDSG GKS+LL RF  N +     STIGV+F  +T++++  TIK QIWDTAGQER+R ITS YYRGA G + VYDVT   +F++++  WL+++  +A SN+  ++IGNK DL   R V+ ++A+  AE+  +++IE SA    NVEKAF TI
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42
Identity = 95/205 (46.34%), Postives = 126/205 (61.46%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  ++ WL + R  A  NIVI++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF      I        + SGE  P  +  G  I  G AS    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI-----PNKIESGELDPERM--GSGIQYGDASLRQIRQP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42
Identity = 92/206 (44.66%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            +YD+LFK+++IGDSGVGKS+LL RF  N F     +TIGV+F  RT+++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + R   K +L+  +      ++ Q  VV     +  KK CC
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ------QQQQNDVVKLTKNSKRKKRCC 201          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42
Identity = 92/206 (44.66%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            +YD+LFK+++IGDSGVGKS+LL RF  N F     +TIGV+F  RT+++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + R   K +L+  +      ++ Q  VV     +  KK CC
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ------QQQQNDVVKLTKNSKRKKRCC 201          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42
Identity = 92/206 (44.66%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 753
            +YD+LFK+++IGDSGVGKS+LL RF  N F     +TIGV+F  RT+++ G  +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+  + D ++  +++GNK D    + V TEDA  +A + G+   ETSA E +NVE+ F  I   + R   K +L+  +      ++ Q  VV     +  KK CC
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ------QQQQNDVVKLTKNSKRKKRCC 201          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42
Identity = 86/166 (51.81%), Postives = 119/166 (71.69%), Query Frame = 1
Query:  136 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 633
            E+D+ FK++LIGDSGVGKS LL RF  + +     STIGV+F  +TL ++G+TIK QIWDTAGQER+R ITS+YYRGA G +LVYD T   +F NV +W+ E+  +A  N+  +++GNKTDL + + V +  A+S+AE  G+ FIETSA  A NVE+ F ++  +I
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDI 171          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.722e-42
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL++I          SGE  P  +  G  I  G  S    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI---------DSGELDPERM--GSGIQYGDISLRQLRQP 200          
BLAST of FC929776 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.722e-42
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 1
Query:  133 EEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP 747
            E YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ +++ WL + R  A  NIV+++ GNK DL   R V   +A  +A+   L F+ETSAL   NVE+AF    +TIL++I          SGE  P  +  G  I  G  S    ++P
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI---------DSGELDPERM--GSGIQYGDISLRQLRQP 200          
The following BLAST results are available for this feature:
BLAST of FC929776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_DICDI7.730e-4345.65Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB10_DISOM7.730e-4343.69Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB1_THEPA1.010e-4251.22Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB4B_DANRE1.319e-4246.34Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB35_RAT1.319e-4244.66Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.319e-4244.66Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.319e-4244.66Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB1D_DICDI1.319e-4251.81Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB4B_RAT1.722e-4245.93Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.722e-4245.93Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929776 ID=FC929776; Name=FC929776; organism=Citrus clementina; type=EST; length=783bp
ATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCTT
CAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATAT
ATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTTG
TTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTACT
CTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATTG
GCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAAA
GCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCAG
TGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACGA
AACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGAC
AGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTGT
TGCTCTTCATCCTAAAGATGGGTCTGTCTTCTT
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